Skermanella mucosa: JL100_009740
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Entry
JL100_009740 CDS
T07652
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL100_009740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smuc03019
]
JL100_009740
Enzymes [BR:
smuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JL100_009740
Messenger RNA biogenesis [BR:
smuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JL100_009740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Utp25_C
AAA_19
AAA_22
CMS1
ANIS5_cation-bd
DUF5612
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEM23001
LinkDB
All DBs
Position
SKMUc:2147807..2149153
Genome browser
AA seq
448 aa
AA seq
DB search
MTSFSELGLSEPILRAISAENYSTPTPIQAQAVPHLIQGRDLLGVAQTGTGKTAAFALPI
LHRLSENRTRPMPQGARVLVLTPTRELAIQIGESFATYGRNLPLTRTVIFGGVGQNPQVQ
SMARGVDILVATPGRLLDLIGQGFIKLDRLEVFVLDEADRMLDMGFIHDVRRVIKVLPAK
RHTLFFSATMPPEIAKLADKILTDPVRVEVTPVSSTAERIEQRVMFVEKADKRPLLGEVL
KRPDIGRALVFTRTKHGANRVVEQLGQIAVRAEAIHGNKSQTARQRALENFRSGEIRVLV
ATDIAARGIDIDGITHVINYDLPNVPESYVHRIGRTARAGTSGIAISFCDSEERAYLKDI
EKLIKVRIPVVEDHPWHSLGGVVQADPDARPPLQDRRPQRHGRPPQGRQDQGRQDQTRQA
HGQGQGRPAQAQQGRPPQGNPSRRRSGR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtctttcagcgaactcggcttgagcgagccgatcctgcgcgccatcagcgccgag
aattacagcactcccacgccgatccaggctcaggccgtgccgcacctgatccagggccgc
gacctgctgggcgtcgcccagaccggcaccggcaagaccgcggctttcgcgcttccgatc
ctccaccgcctgtcggaaaaccgcacccgtcccatgccgcagggcgcccgcgtcctggtg
ctgaccccgacccgcgaactcgccatccagatcggcgagagcttcgcgacctacggccgc
aacctgccgcttacccgcaccgtcatcttcggcggcgtcggccagaacccgcaggtccag
agcatggcgcggggcgtcgacatcctcgtcgccacgccgggccggctgctcgacctgatc
gggcagggcttcatcaagctcgaccggctcgaagtgttcgtgctggacgaggccgaccgc
atgctcgacatgggcttcatccatgatgtccggcgggtgatcaaggtcctgcccgccaag
cggcatacgctgttcttctccgccaccatgccgccggagatcgcgaagctggccgacaag
atcctgaccgatccggtccgggtcgaggtgacgccggtctccagcacggcggagcggatc
gagcagcgcgtcatgttcgtcgagaaggcggacaagcggcccctgctgggcgaagtgctc
aagcggccggacatcgggcgcgccctggtgttcacgcggaccaagcacggcgccaaccgg
gtcgtcgagcagctcggccagatcgcggtccgggccgaggcgatccacggcaacaagtcg
cagaccgcccgccagcgggcgctggagaatttccgatccggcgagatccgggtgctggtc
gccaccgacatcgccgcccgcggcatcgatatcgacggcatcacccacgtgatcaactac
gacctgccgaacgttccggaaagctacgtccaccggatcggccggacggcgcgggcgggg
accagcggcatcgccatctcgttctgcgacagcgaggagcgggcctacctgaaggacatc
gagaagctgatcaaggtccgcatcccggtcgtcgaggatcatccctggcattccctcggc
ggcgtcgtgcaggccgatcccgatgcccggcctcccctccaggatcgtcgtccgcagcgt
catggccgcccgccccagggtcggcaggatcagggccgtcaggaccagacgcgccaggcc
catggccaggggcagggccgtccggcgcaggcccagcagggccggccgccccagggcaac
ccgtcccgccgccgctccgggcgctga
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