Skermanella mucosa: JL100_009940
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Entry
JL100_009940 CDS
T07652
Name
(GenBank) PAS domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03030
DNA replication
smuc03430
Mismatch repair
smuc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JL100_009940
03430 Mismatch repair
JL100_009940
03440 Homologous recombination
JL100_009940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smuc03032
]
JL100_009940
03400 DNA repair and recombination proteins [BR:
smuc03400
]
JL100_009940
Enzymes [BR:
smuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JL100_009940
DNA replication proteins [BR:
smuc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JL100_009940
DNA repair and recombination proteins [BR:
smuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JL100_009940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PAS
PAS_9
PAS_4
RNase_H_2
PAS_8
DEDDh_C
PAS_10
DNA_pol_A_exo1
PAS_7
Motif
Other DBs
NCBI-ProteinID:
UEM23040
LinkDB
All DBs
Position
SKMUc:complement(2195457..2197541)
Genome browser
AA seq
694 aa
AA seq
DB search
MALLFASVGAVAAVLMILLPSAMANADGAGNPLVTQAVGGAAIALAAVFALWRIVDGSIL
RSLAALAGEARVIGHGTVAARVPPERYAALSPLPQAINELGEKLAAARSDIDEAVASSTA
VVQEQKSRLSTLLRDLHEGVLVCNQQHQILLYNQAALTLLHLTGDLGLGRNLLQVVTRAP
VLHTLERLTLRVKDGRHHSHPMGVTAEFVAATTDGRYLLQGRMSLILQEEDIITGYVVTF
DDVTAELAALGKRDAVLRAATEGFRPPVANLLAAAETLSDNPDLDRESRRAFEQVILEEC
AALSNRLERVTGDYRSIITGAWPMSDIHSGNLINLVIARVAAAGGPAITLTGLPQWLHGD
SYSLVVLLDHLVRRLGEVTGAGNFDLSAETGGSWVFVDISWSGTPVASSVVDGWMEQALP
DALGGLTVTDVLQHHRSELWCDAPRPGLARMRVPLPPTEQLHGHADRAPPSARPEFFDFS
LLHQPIATAELGRTPLDKLTFVVFDTETTGLRPSDGDEIIQIAGVRIVNGRILTGETFSQ
LVDPGRMIPPETIQFHGVTDDMVRGKPRASVVLPQFHLFVSGAVLVAHNAAFDLKFLKMK
EKVSGVRFDHPVLDTMLLSRQLQGPDADHTLDGIAKRLGIQVVDRHTALGDSLLTAAIFL
RFVDMLREQNVITLDDAIRSANILVELHARERAF
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggccctcctgttcgcgtcggtcggtgcggtcgccgccgtcctgatgatcctgctgccg
tcggcgatggccaacgccgacggggccggcaacccgctggtgacccaggccgtcggcggg
gccgccatcgcgctggcagccgtgttcgccctgtggcggatcgtcgacgggagcatcctg
cggtccctggcggcgctggccggagaggcccgggtgatcggccacggcaccgtggcggcc
cgggtcccgccggagcggtacgcggcgctctcccccctgccccaggcgatcaacgagctt
ggcgagaaactggccgccgcgcggtccgacatagacgaggcggtcgcctcctcgaccgcg
gtggtgcaggaacagaagagccggctttccaccctgctgcgcgacctgcacgagggcgtg
ctggtgtgcaaccagcagcaccagatcctgctctacaaccaggcggccctgaccctgctc
cacctgaccggcgacctgggcctcggccggaacctgctgcaggtggtgacccgggctccc
gtgctccacacgctggagcggctgaccctgcgggtcaaggatgggcgccaccacagccac
cccatgggcgtcaccgccgagttcgtcgccgccaccaccgacgggcgctacctgctccag
gggcgcatgagcctgattctccaggaggaggacatcataaccggctatgtggtcaccttc
gacgacgtcaccgcagaactggcggcgctgggcaagcgcgacgcggtccttcgggccgcg
accgagggattccggccgccggtcgccaacctgctggccgcggccgagaccctgtccgac
aaccccgacctggacagggagtcgcgccgggcgttcgaacaggtgatcctggaggaatgc
gcggccctgtccaaccgcctggagcgcgtgaccggcgactaccgcagcatcatcaccggc
gcctggccgatgagcgacatccactccggcaacctgatcaaccttgtgatcgcccgggtc
gccgccgccggcgggccggccatcacgctgaccgggctgccgcaatggctgcacggcgac
agctacagcctcgtcgtgctgctcgaccatctggtgcggcggctgggcgaggtcaccggc
gccgggaacttcgacctttcggcggagaccgggggctcctgggtcttcgtcgacatctcg
tggagcggcacgccggtcgcctcctccgtcgtggacggctggatggaacaggccctgccc
gacgcgctgggcggcctgaccgtcaccgacgtcctgcagcatcaccggagcgaactgtgg
tgcgacgctccccggcccgggctggctcgcatgcgcgtgccgctgccgccgaccgaacag
ctccacggccatgccgaccgcgcgccgccctcggcccggccggaattcttcgatttctcc
ctgctgcaccagccgatcgccacggccgagttgggccggacgccgctcgacaagctgacc
ttcgtcgttttcgataccgaaacgaccggcctccgcccgtcggacggtgacgagatcatc
cagatcgccggcgtgcggatcgtcaacgggcgcatcctgaccggcgagaccttcagccag
ctggtcgatcccggccgaatgatcccgccggagaccatccagttccacggcgtcaccgac
gacatggtgcgcggcaagccgcgggcatcggtcgtgctgccgcagttccacctgttcgtg
tcgggcgccgtgctggtcgcccacaatgccgccttcgacctcaagttcctcaagatgaag
gagaaggtcagcggggtccggttcgaccatcccgtgctcgacaccatgctgctgtcgcgc
cagctccaggggccggatgccgaccacacgctggacggcatcgccaagcggctgggcatc
caggtggtcgaccgccacaccgccctgggcgacagcctgctgaccgcggcgatcttcctg
cggttcgtcgacatgctgcgggaacagaacgtcatcacgctcgacgacgcgatccgaagc
gccaacatcctggtcgaactgcacgcgcgggagcgggcgttttga
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