Skermanella mucosa: JL100_011405
Help
Entry
JL100_011405 CDS
T07652
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
smuc
Skermanella mucosa
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smuc03032
]
JL100_011405
03400 DNA repair and recombination proteins [BR:
smuc03400
]
JL100_011405
Enzymes [BR:
smuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JL100_011405
DNA replication proteins [BR:
smuc03032
]
Prokaryotic type
DNA Topoisomerases
JL100_011405
DNA repair and recombination proteins [BR:
smuc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JL100_011405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UEM23303
LinkDB
All DBs
Position
SKMUc:complement(2504106..2505203)
Genome browser
AA seq
365 aa
AA seq
DB search
MQDGAIRVNEEEGTVVDPPAAAEQAGLVYVSDEEPGIRRRKSGKGFSYRNPDDSVLKDKA
DLERIRSLAIPPAYTDVWICPDPRGHIQATGRDDRGRKQYRYHPRWREVRDSTKYERMLE
FGRALPAIRDRIAADMGKRGLPREKVLATVVHLLENTLIRVGNATYSKENKSFGLTTLQD
RHVEVDGGKLRFEFKGKSGKVWNLQVKDRRIARIVKSCQDVPGQHLFQYFDDDGTRHGVT
SQDVNDYLREISGKDFSAKDFRTWAGTVLAALALAEFESFDTKAAAKRNLRAAIERVSAR
LGNTPAICRKCYIHPQVLDCYLEGDLVTQLKDQVEDDLRSGLAALKPEEAAVLAFLHRRL
ERDAA
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacggcgcgatccgcgtgaacgaagaggaaggcactgtcgtcgatccgccggcg
gcggcggaacaggccggactggtctatgtctcggacgaggagcccgggatccggcggcgg
aagtcgggcaagggattcagctacaggaaccccgacgacagcgtcctgaaggacaaggcg
gaccttgagcgtatcagatcactggcgatcccgccggcctacacggatgtctggatctgc
cccgacccccggggacacatccaggccacgggccgcgacgaccggggccgcaagcagtac
cgttaccatccccgctggcgggaagtgcgtgacagcaccaagtacgagcgcatgctggag
ttcggccgggcactgcccgcgatccgggaccgcatagcggccgacatgggcaagcgcggg
ctgccgcgcgagaaggtcctggcgaccgtcgtccacctgctggaaaatactctgatccgc
gtcggcaacgcgacatattccaaggaaaacaagagcttcggcctgactaccctgcaggat
cggcatgtcgaggtcgatggcggcaagctgcgtttcgagttcaaggggaagagcggcaag
gtctggaacctccaggtcaaggaccggcggatcgcccgcatcgtcaagtcctgccaggac
gtgccgggccagcacctgttccagtacttcgacgatgacggcacccgccacggcgtcacc
tcgcaggacgtgaacgattatctcagggaaatcagcggcaaggacttctcggccaaggac
ttccgcacctgggccggaaccgtgctggcggcgctggctctggccgagttcgagagcttc
gacacgaaggccgccgccaagcgcaatctgcgcgccgccatcgaacgggtttccgcccgg
ctcggcaacacgccggcgatctgccggaaatgctatatccacccccaggtgctcgactgc
tatctcgaaggggatctggtcacccaattgaaggatcaggtagaagacgatctgcgctcc
ggcctcgccgccctcaagccggaggaagcggccgttctggcctttctccaccgccgcctg
gagcgcgacgccgcctga
DBGET
integrated database retrieval system
