Skermanella mucosa: JL100_011960
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Entry
JL100_011960 CDS
T07652
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
smuc
Skermanella mucosa
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smuc03000
]
JL100_011960
Transcription factors [BR:
smuc03000
]
Prokaryotic type
Helix-turn-helix
Other families
JL100_011960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
HTH_23
AAA_5
AAA_2
DUF815
HTH_30
HTH_7
AAA
Motif
Other DBs
NCBI-ProteinID:
UEM23408
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All DBs
Position
SKMUc:complement(2625519..2627444)
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AA seq
641 aa
AA seq
DB search
MMIAPGSTASDHIDRIMAWVDGAAVPTSPPPHDIIADSWKRCVLKHRLDPATVNAPNVLT
PPELRDHVEPVGEFLGFARESLLGLHAQLAASGYVVLLADRHGVTIERFGSLPVEGRMAR
AGLERGAVWAEDCEGTNGVGTCLASGKPILVHRFDHFAVRHTGLTCSVAPILGPAGELLA
ALDVSSLTAPAGGQFQSLVHGFVMSAARQIEDTWFLARTRENCVLALARSPEMAGIETDA
MIAVDPAGTVVGLNGGARRLFAGKTLIGTRLDAVLETSLDRLAEGMALVRQSGTERRWAV
TLRMPLAATARRQPPRRLAARSPATARPSRPMTLEELAGGDPQMQAHVRRIRRFVDCDLP
ILMGGETGTGKEAFARAIHDASARAARAFVGINCAALPESLIESELFGYAEGAFTGARRD
GMRGKLVQANGGTLFLDEIGDMPLGAQTRLLRVLAEREVIPLGGDRAIPLDLHVICASHH
DLEALVASGAFRADLFYRLNGLRIVLPPLRDRADKAALIDRALELEATGLPAPPRLTPEA
RSLLMSHDWPGNIRQLRTVVRAAVIGCEDGLIRCEDLPLGMPRFSGAAAACPAACTEAER
LQAILRSHKWCVADAARSLNVSRMTLYRRMAKFGVVPPNQL
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcgcgcccggatcgacggcgagcgaccatatagaccgcatcatggcctgggtc
gacggagccgccgtgccgaccagtccgccgccccacgacatcatcgccgactcctggaag
cgctgcgtgctgaagcaccggctcgacccggccaccgtcaacgctcccaacgtcctgacg
ccgcccgagttgcgcgaccatgtcgagccggtcggcgagttcctgggcttcgcccgggag
agcctgctcggcctccatgcccagctcgcggcgtccggctacgtcgtcctgctggccgac
cggcacggcgttacgatcgagcggttcggcagcctgccggtcgaggggcgcatggctcgg
gccgggctggaacgcggcgccgtctgggcggaggattgcgagggcaccaacggcgtgggc
acctgcctcgcttcgggcaagccgatcctggtccatcgcttcgatcatttcgcggtccgc
cacaccggcctgacctgctccgtggcgccgatcctgggacccgccggggagctgctggcc
gccctggacgtctcttccctgaccgcgccggcgggtgggcagttccagtcgctggtccac
ggcttcgtcatgtccgccgcgcgccagattgaggacacctggttcctggcccgcacgcgg
gagaactgcgtgctcgccctcgcccgctcgccggagatggcggggatagagaccgatgcc
atgatcgcggtcgatccggcgggcaccgtggtcggcctcaacggcggcgcgcgcaggctg
ttcgccggcaagaccctgatcggcacccgactggacgccgtgctggagacgtcgctggac
cggctggccgaggggatggccctggtacgccagtccggcaccgagcggcgctgggcagtg
acgctccggatgccgctggcggcgacggcgcggcggcagccgccgcgccggctcgccgca
cgctccccggcgacggcgcgcccgtcccgccctatgacgctcgaagagctggccggcggc
gatccccagatgcaggcccatgtccgccgcatccgccgcttcgtagactgcgacctgccg
atcctgatgggcggcgagaccgggaccggcaaggaggctttcgcccgcgcgatccatgac
gccagcgcccgcgccgccagggcgttcgtcggcatcaactgcgcggccctgccggaaagc
ctgatcgagagcgaactgttcggttatgcggaaggcgccttcaccggcgcgcggcgcgac
ggcatgcgcggcaagctggtccaggccaacggcggcaccctgttcctggacgagatcggc
gacatgccgctgggagcccagacccggctgctccgcgtcctggccgaacgggaggtgatc
ccgctagggggcgaccgcgccattccgctggatcttcacgtgatctgcgccagccaccac
gacctggaagccctggtcgcctccggcgccttccgggcagacctgttctaccggctgaac
ggcctgcgcatcgtcctgccgccgctgcgcgaccgggccgacaaggctgcgctgatcgac
cgcgcgctggagttggaggcgacggggcttcccgcccctccccgcctgacgcccgaagcg
cgatccctgctgatgagccacgactggccgggcaatatccgccagctccggacggtcgtt
cgggccgcggtgatcggctgcgaggacgggctgatccggtgcgaggaccttccccttggc
atgccgcgcttttccggcgcggccgccgcctgcccggccgcctgtaccgaggcggaacgg
ctccaggcgatcctgcgcagccacaaatggtgcgtggcggatgccgcccggagcctcaac
gtcagccggatgacgctttaccggcgcatggccaagttcggcgtcgtgccgccgaaccag
ctttga
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