Skermanella mucosa: JL100_014790
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Entry
JL100_014790 CDS
T07652
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL100_014790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smuc03400
]
JL100_014790 (mfd)
Enzymes [BR:
smuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL100_014790 (mfd)
DNA repair and recombination proteins [BR:
smuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JL100_014790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_30
SecA_DEAD
AAA_16
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UEM24057
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All DBs
Position
SKMUc:complement(3203815..3207144)
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AA seq
1109 aa
AA seq
DB search
MARLAEAVGFFAPEIELVQIPAWDCLPYDRVSPNVDIVSRRVDGLTRLIEPGKGRPRLVL
TTVNALLQKVPPRATFAHAAFRAGVGDRIDLDKLQAYLAHNGYTRAQTVREPGEFAIRGG
IVDLFPPGTEEPLRLDLFGDELEGVRAFDPMSQRTTEKRDGIALKPMSEVFLDEQSIARF
RSGYRELFGAVLDEDPLYEAVSAGRKHGGMEHWLPLFHSGMETILDYVPEAVVTLDPQAE
ESRDSRFAQIADFYHARKTLQAVEKKANNPVYKPLPPAMLYLDEDGWNALLGARAVGQLV
PFALAEGQAGVDAGGRRGRDFADARAKPDVNVFDALKSHVEELQKHDRRCVVAGYSQGAR
DRLLTVLRDHGIERVEICESWEGARRLDRRTTALIVLGIETGFAAPDVAVITEQDILGDR
LARPTKKRRRSANFIAELSSLSEGDLVVHVDHGIGRYDGLETLQVTGAPHDCLRLIYEGG
DKLYLPVENIELLSRYGSEDSAQLDKLGGVGWQGRKARVKKRLKDMAEALLKIAAERELR
RGTPVSAPDGIYAEFAARFPYPETEDQLRAIEEVLEDLQSGRPMDRLVCGDVGFGKTEVA
LRAAFIAALSGMQVAVVVPTTLLARQHSRTFEKRFAGLPVRIGQLSRLVPAKEQKLVKEG
LAAGTIDIVIGTHALLSKTVLFKDLGMVIVDEEQHFGVKQKERLKQLRADVHVLTLTATP
IPRTLQMALAGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQTYYVCPR
LEDLPRVYERLQELVPEVKVVMAHGQMAATQLEEVMTAFDDGQFNVLLATNIVESGLDVP
NANTMIIHRSDLFGLAQLYQLRGRIGRSKVRGYAYLTYAPRTVLSATATQRLHVIETLDS
LGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGVELYQHMLEEAVATARSGAGAAADSED
TWTPTINLGMPVLIPEAYIADLNVRLGLYRRISELVDRGEIDSFAAELIDRFGPLPPEVE
NLLNVMTIKQLCRTAGVERVDAGPKGAVLSFHNNSFARPDQLVIFIGKQAATMKLRPDHK
LVFTRTWDDTATRVKGVQRLMQDLAKLAA
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcctggccgaggcggtcggcttcttcgcgccggagatcgagcttgtgcagatc
ccggcctgggactgcctgccctatgaccgcgtgtcgcccaacgtcgatatcgtcagccgc
cgggtcgatgggctgacccgcctgatcgagcccggcaaggggcggccgaggctggtcctg
acgacggtcaacgcgctgctccagaaggtgccgccgcgcgcgaccttcgcccatgccgcc
ttccgcgccggcgtcggcgaccgcatcgacctggacaagcttcaggcctatctggcccac
aatggctatacccgcgcgcagacagtgcgcgagcccggcgagttcgcgatccgcggcggc
atcgtggacctgttcccgcccggcaccgaggagccactgcggctcgacctgttcggcgac
gagctggaaggggtgcgcgccttcgacccgatgagccagcggacgacggagaagcgcgac
ggcatcgccctgaagccaatgtcggaggtcttcctggacgagcagtcgatcgcccggttc
cgctcgggctatcgcgagctgttcggcgccgtgctggacgaggacccgctatacgaggcg
gtcagcgccgggcgcaagcatggcggcatggagcactggctgccgctgttccattccggc
atggaaacgatcctggactacgtaccggaagcggtcgtgacgctcgatccgcaggcggaa
gagtcccgcgattcccggttcgcgcagatcgccgacttctatcacgcgcggaagacgctt
caggcggtggagaagaaggccaacaatccggtctacaagccgctgccgcccgcgatgctg
tacctggacgaggatggctggaacgcgctgctgggcgcgcgggcggtgggccagctggtg
ccgttcgccctcgcggaggggcaggcgggggtggacgccggtgggcggcgcggccgggac
ttcgccgacgcccgggccaagcccgacgtcaacgtgttcgacgcgctgaagtcccatgtg
gaagaactccagaagcacgaccggcgctgcgtcgtcgccggctacagccagggtgcccgc
gaccggctgctgaccgtgctgcgcgaccacgggatcgagcgggtcgaaatctgcgagagc
tgggaaggggccaggcggctcgaccggcgcaccaccgcgctgatcgtcctggggatcgag
acaggcttcgccgcgcccgacgtggcggtgatcaccgagcaggacatcctgggcgaccgg
ctggcgcggccgaccaagaaacgtcggcgctcggccaacttcatcgccgagctgtccagc
ctgagcgagggcgacctggtcgtccacgtggaccacggaatcgggcgctacgacggcctg
gagacgctccaggtgaccggcgcgccgcacgattgcctgcggctgatctacgagggcggt
gacaagctctatctcccggtcgagaacatcgagctgctgtcgcgctacgggtcggaggac
agcgcccagctggacaagctgggaggcgtcggctggcagggccgcaaggcgcgggtcaag
aagcgcctgaaggacatggccgaggccttgctgaagatcgccgccgagcgcgagctgcgc
cggggaacgcccgtttcggcaccggacgggatctatgccgagttcgcggcgcggttccca
taccccgagacggaagaccagctccgcgcgatcgaggaggtcttggaggatcttcagtcc
ggtcgcccgatggaccggctggtatgcggcgacgtcgggttcggcaagaccgaggtggcg
ctgcgcgccgccttcatcgccgccctgtccggcatgcaggtcgcggtcgtggtgccgacc
acgcttctggcccgccagcattcgcgtaccttcgagaagcggttcgccggcctgccggtc
aggatcgggcagctctcccgcctggtgccggcgaaggaacagaagctggtcaaggaaggt
ctcgccgccggaacgatcgacatcgtgatcgggacccacgcgctgctgtccaagaccgtg
ctgttcaaggatctcggcatggtgatcgtggacgaggagcagcatttcggcgtcaagcag
aaggagcggctgaagcagctccgcgccgacgtccacgtgctgaccctgaccgcgaccccg
attccccggacgctccagatggccctggccggcgtgcgcgagctgagcctgatcgcgacg
ccgccggtggaccggctggcggtgcggaccttcgtgctgccctacgacccggtggtgatc
cgggaggcgatcctgcgcgagcactaccgcggcggccagacctattatgtctgcccccgg
ctggaagacctgccgcgggtctacgagcgccttcaggagctggtgccggaggtcaaggtc
gtgatggcccacggccagatggcggcgacccagctggaggaggtcatgaccgccttcgac
gacggccagttcaacgtgctgctggcgaccaacatcgtcgaatcgggcctggacgtgccc
aacgccaacacgatgatcatccaccgttccgacctgttcgggctggcccagctctaccag
ctgcgcggccggatcggccggtccaaggtccggggctacgcctacctgacctatgcgccc
cggaccgtgctgtccgccaccgcgacccagcggctgcacgtgatcgaaaccctggacagc
ctgggcgcgggattccaactcgccagccacgatatggacatccgcggcgccgggaacctg
ctgggggaagagcagtcggggcatatcaaggaggtcggagtcgagctgtaccagcacatg
ctggaggaggcggtggcgaccgcccggagcggtgccggggctgcggcggactcggaggac
acctggaccccgacgatcaacctgggcatgccggtactgatcccggaagcctacatcgcc
gacctgaacgtccgtctggggctgtaccgccggatctccgaactggtggaccggggcgag
atcgacagcttcgcggcggaactgatcgaccggttcggaccgctgccgcccgaggtggag
aacctgctgaacgtcatgacgatcaagcagctctgccgtaccgccggggtcgaacgggtc
gacgccgggcccaagggggctgtcctgtctttccacaacaacagcttcgcccggcccgac
cagctcgtgatcttcatcggcaagcaggccgcgaccatgaagctgcggcctgaccacaag
ctggtctttacccgtacttgggacgacacggcgacccgggtcaagggcgtacagcggctg
atgcaggacctcgccaagctggcggcgtga
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integrated database retrieval system
