Skermanella mucosa: JL100_015175
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Entry
JL100_015175 CDS
T07652
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03030
DNA replication
smuc03430
Mismatch repair
smuc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JL100_015175
03430 Mismatch repair
JL100_015175
03440 Homologous recombination
JL100_015175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smuc03032
]
JL100_015175
03400 DNA repair and recombination proteins [BR:
smuc03400
]
JL100_015175
Enzymes [BR:
smuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JL100_015175
DNA replication proteins [BR:
smuc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JL100_015175
DNA repair and recombination proteins [BR:
smuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JL100_015175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
UEM18462
LinkDB
All DBs
Position
SKMUc:complement(3289642..3290541)
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AA seq
299 aa
AA seq
DB search
MTPAEMAAALEDTGRYRVFDVYRQTDGYGDLPPDATVCRLLYVDTETTGLEHDAEIIELA
AVQVEYDPSTGRLGRILAARSWLEQPAGGAEVPAEVTALTGITTDMVAGQRIDDATVLDL
LAASNLVVSHNASFDRPKLEARLPAFAARPWACTAAEIDWKAEGIGSAKLDYVAFRMGFI
FAGAHRGEVDCLAGVEVLSRTLPVTGTLAMASLLARARMLTSRVWAIGSPFDAKDALKRR
GYRWNDGSIPGSARAWFRDLQEDGADAELEWLRANAGCTGVPVRLTARDRHAARAMLIP
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgaccccggccgaaatggccgccgccctggaggacaccggccgctaccgcgtcttcgac
gtctaccgccaaacggacgggtacggcgacctgccgccggatgcgacggtctgccggctg
ctctacgtcgacacggagacgaccggcctcgagcacgacgccgagatcatcgaactggcg
gccgtgcaggtggaatacgacccgtcgaccggcaggctcggcaggatcctggccgcccgt
tcgtggctggagcagccggccggcggcgccgaagtgccggcggaagtgaccgcgctgacc
ggcatcaccacggacatggtcgccgggcagcggatcgacgacgcgaccgtgctcgacctg
ctggccgcctcgaacctggtggtctcgcacaacgcgtccttcgatcgtccgaagctcgag
gcgcggctgccggctttcgcggcgaggccctgggcctgcacggcggccgagatcgactgg
aaggccgaaggcatcggctcggcgaagctcgattatgtcgccttccgcatgggcttcatc
ttcgccggagcacatcgaggcgaggtcgattgcctggcgggcgtcgaggttctgagccgg
acgctgccggtgacgggaacgctcgcgatggcgagcctgctggcgcgggcacggatgctg
acgtcgagggtgtgggcgatcggcagcccgttcgacgccaaggatgcgctgaagcggcgc
ggataccggtggaacgacggatcgatcccgggcagcgccagggcatggttccgcgacctg
caggaggatggtgcggatgccgaactggagtggctgagggcgaatgccggctgcacgggc
gttccggtccggctgacggcgcgggaccgccatgccgcgagggcgatgctgatcccctga
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