Skermanella mucosa: JL100_019975
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Entry
JL100_019975 CDS
T07652
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JL100_019975 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smuc03021
]
JL100_019975 (rpoC)
03400 DNA repair and recombination proteins [BR:
smuc03400
]
JL100_019975 (rpoC)
Enzymes [BR:
smuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JL100_019975 (rpoC)
Transcription machinery [BR:
smuc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JL100_019975 (rpoC)
DNA repair and recombination proteins [BR:
smuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JL100_019975 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UEM19358
LinkDB
All DBs
Position
SKMUc:complement(4293235..4297428)
Genome browser
AA seq
1397 aa
AA seq
DB search
MNELMNIFGQVQGPQSFDQIRISIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLKDLERVLYFENYVVVEPGLTPLKLHQLLGEEEYISAQEEYGDDSFEAK
IGAEALGHMLSQIDLEQERITCRDELRETNSEAKRKKLVKRLKLIEAFQESGSRPEWMIL
NVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLELYGMASTIKAAKRMVEKERPEVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYITMDRPGEKGEGMAFANIGEIQQALDA
KAVTLHARVKARYRTIDDEGNPITVRVETTPGRMLLSEILPRNKMVPFSVINRLLTKKEI
TNVIDLVYRHCGQKETVIFADRLMKLGFGHACRAGISFGKDDMVIPPEKQALVADAQERV
KEYEQQYLDGLITQGEKYNKVVDVWSETTEKVANAMMDVIKKDRPGQGINSVYMMAHSGA
RGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDAIIVEVDCGTTDGITVKAVIEGGEVISPLADRILGRTTAVELKN
PLTGEVVVGAGQLIDEALVDTIEQAGIDSVLIRSVLTCHTRDGVCAKCYGRDLARGTLVN
VGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSVEAAFDATLQIKNRNVVLNSE
GVPVVMGRNCELVLVDDQGREKARHRIPYGAKLLAAEGEKVERGRKLAEWDPYTLPIITE
REGIANYVDLIEGVSVREVMDEATGISSKVVVDWRQQPRGADLRPRITLRDETGDVVKLP
NGMEARYYMSVDAILSIENGARVRAGDVLARIPREGSKTRDITGGLPRVAELFEARRPKD
FAIISETDGRVEFGKDYKTKRRIVVVPNDESEQPKEYLIPKGKHISVQEGDFVQRGDLLM
DGNPVPHDILAVMGVEALAAYLTNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEIEDAGD
TTFLVGEQVDRQEFDIENEKVIAEAGADGVQLRAAKARPVLQGITKASLQTKSFISAASF
QETTRVLTEAAVSGRVDNLDGLKENVIVGRLIPAGTGSVVNRLKQIAAERDRETTPIEHD
GSESVMPGLPENRPNVA
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttgatgaatattttcggccaggtccagggcccgcagagcttcgatcagatt
cgcatctcgatcgcgagccccgagcggatccgctcctggtccttcggcgagatcaagaag
ccggagaccatcaactaccgtaccttcaagccggaacgcgacgggctgttctgcgcccgc
atcttcggtccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaagtac
cgcggcatcatctgcgaaaagtgcggcgtcgaggtcaccctgtccaaggtgcgccgcgag
cgcatgggccatatcgagctggcctcgccggtggcgcacatctggttcctgaagtccctg
ccgagccgcatcggcctgctgctcgacatgacgctgaaggatctggaacgggtcctttat
ttcgagaactacgtggtggtcgagcccggcctgaccccgctgaagctgcaccagctcctc
ggcgaggaggagtatatctccgcgcaggaagagtacggcgacgactcgttcgaggccaag
atcggcgccgaggcgctgggccacatgctgtcccagatcgacctggagcaggagcgcatc
acctgccgcgacgagctgcgcgagaccaactccgaagccaagcgcaagaagctggtcaag
cggctgaagctgattgaggcgttccaggaatccggttcccggccggaatggatgatcctg
aacgtgatcccggtcatcccgcccgagctgcgtccgctggtcccgctcgacggcggccgg
ttcgcgacctcggacctcaacgacctgtaccgccgcgtgatcaaccggaacaaccgcctg
aagcggctgatcgagctgaaggcgccggacatcatcgtgcgcaacgagaagcgcatgctg
caggaggcggtcgacgccctgttcgacaacggccgccgcggccgcgtcatcacgggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgtttccga
cagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtggtcggcccg
gagctgaagcttcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagccc
ttcatctacgccaagctcgagctgtacggcatggcctcgaccatcaaggcggccaagcgc
atggtggagaaggagcggccggaggtctgggacatcctcgaggaggtcatccgcgagcac
ccggtcctgctgaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagccg
acgctgatcgagggcaaggcgatccagcttcacccgctggtctgcaccgccttcaacgcg
gacttcgacggcgaccagatggcggtccacgtgccgctgtcgctggaagcccagctcgaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgcccagccaggacatcgtcctgggcctgtactacatcacgatggaccggcccggc
gagaagggcgagggcatggccttcgccaacatcggcgagatccagcaggccctggacgcc
aaggcggtcaccctgcacgcccgcgtcaaggcgcgctacaggaccatcgacgacgagggc
aatcccatcaccgtgcgggtggagactaccccgggccgcatgctgctgtccgagatcctg
ccgcgcaacaagatggtcccgttctcggtcatcaaccgcctgctgaccaagaaggagatc
accaacgtcatcgatctggtctaccgccactgcggccagaaggagacggtgatcttcgcc
gaccggctgatgaagctgggcttcggccacgcctgccgcgccggcatctcgttcggcaag
gacgacatggtcatcccgccggagaagcaggcgctggtcgccgacgcgcaggagcgggtc
aaggagtacgagcagcagtacctggacggcctgatcacccagggcgaaaagtacaacaag
gtcgtcgacgtctggtcggaaaccaccgagaaggtggccaacgccatgatggacgtgatc
aagaaggaccgtccgggccagggcatcaactcggtctacatgatggcgcactccggtgcg
cgtggctcggccgcccagatcaagcagctggccggcatgcgcggcctgatggccaagccg
tcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaaggcctgaccgtgctg
gagtacttcaactccacccacggtgcccgtaagggtctggccgacaccgccttgaagacg
gcgaactcgggctacctgacccgccgtctggtcgacgtggcgcaggacgcgatcatcgtc
gaggtcgattgcggcaccaccgacggcatcaccgtcaaggccgtgatcgagggcggcgag
gtgatctcgccgctggccgaccggatcctgggccgcaccacggccgtcgagctgaaaaac
ccgctgaccggcgaagtcgtcgtcggtgccggccagctgatcgacgaggcgctggtggac
acgatcgagcaggccggcatcgactcggtgctgatccgctcggtcctgacctgccacacc
cgggacggcgtgtgcgccaagtgctacggccgcgacctggcccgcggcaccctggtgaac
gtcggcgaggcggtgggcgtcatcgcggcccagtcgatcggcgagccgggcacccagctg
accatgcgtaccttccacatcggcggcgccgcccagcgcggtgccgagcagtcctcggtc
gaggcggcgttcgacgcgacccttcagatcaagaaccgcaacgtggttctgaactccgag
ggcgtgccggtcgtcatgggccggaactgcgagctggtgctggtggacgaccagggccgc
gagaaggcgcgtcaccgtattccctacggtgccaagctgctggcggccgagggcgagaag
gtcgagcgcggccgcaagctggccgaatgggacccgtacaccctgccgatcatcaccgag
cgcgagggtatcgccaactacgtggacctgatcgagggcgtgtccgtccgcgaggtcatg
gacgaggcgaccggtatctccagcaaggtggtggtggactggcgccagcagccccgcggt
gccgacctccgtccgcgcatcaccctgcgggacgagaccggcgacgtggtcaagctgccg
aacggcatggaagcgcgctactacatgtcggtcgacgccatcctgtcgatcgagaacggt
gcccgcgtgcgggcgggcgacgtgctggcccgcatcccgcgcgaaggctccaagacgcgt
gacatcaccggcggtctgccgcgcgtggccgaactgttcgaggcccgccgcccgaaggac
ttcgcgatcatctcggagaccgacggccgggtcgagttcggcaaggactataagaccaag
cgccggatcgtggtcgttcccaacgacgagagcgagcagcccaaggagtatctgatcccc
aagggcaagcacatctcggtccaggaaggcgacttcgtccagcgcggcgacctgctgatg
gacggcaaccccgttccgcacgacatcctggcggtcatgggtgtggaggcgctggccgcc
tacctcaccaatgagatccaggaggtctaccggctgcagggcgtgaagatcaacgacaag
cacatcgaggtgatcgtccgccagatgctgcagaaggtcgagatcgaggacgcgggcgac
accaccttcctggtgggcgagcaggtggaccgtcaggagttcgacatcgagaacgagaag
gtcatcgcggaagccggcgccgacggcgtgcagctccgtgcggcgaaggcgcggccggtg
ctccagggcatcaccaaggcttcgttgcagaccaagtcgttcatctccgccgcgtcgttc
caggaaaccacccgcgtgctgaccgaggccgccgtctcgggccgcgtggacaacctggac
ggcctgaaggagaacgtgatcgtcggtcgcctgatcccggccggtaccggttcggtggtc
aaccgcctgaagcagatcgccgccgagcgcgaccgggagaccaccccgatcgagcacgac
ggcagcgagagcgtcatgccgggcctgccggaaaaccggcccaacgtggcgtaa
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