Skermanella mucosa: JL100_025930
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Entry
JL100_025930 CDS
T07652
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
smuc
Skermanella mucosa
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smuc03016
]
JL100_025930 (thpR)
Enzymes [BR:
smuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
JL100_025930 (thpR)
Transfer RNA biogenesis [BR:
smuc03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
JL100_025930 (thpR)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
UEM20478
LinkDB
All DBs
Position
SKMUc:complement(5566235..5566771)
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AA seq
178 aa
AA seq
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MIRLFVALELPEAVRERLVGLGGGVPGARWTEPENLHLTVRFIGEVENGLLPDIDAALGS
VSAPAFDLVLDGVGQFGSGSRARLLWAGVERNDALVHLNQKVESALVRAGLPREERRFSP
HVTLARLRDTPQERVGRFIQDRGLFRAGPIRVEHFTLFESRPGNGGPVYDPLREYPLG
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtctgttcgtcgcccttgagctgcccgaggccgtccgcgagcgtctggtcggc
ctgggcggcggcgtgcccggtgcccgctggaccgagccggagaacctgcacttgacggtg
cgcttcatcggcgaggtcgagaacggcctgctgcccgacatcgacgcggcgctgggaagc
gtctccgccccggccttcgacctcgtgctggacggggtcgggcagttcggcagcggcagc
cgggcgcgccttctgtgggccggggtggagcgaaacgacgccctggtccacctgaaccag
aaggtcgaatcggcgctggtccgcgccgggctgccgcgcgaggagcggcgcttcagcccg
cacgtgaccctggcccgcctgcgcgatacgccccaggagcgggtcgggcgcttcatccag
gaccgcggcctgttccgcgccggaccgatccgggtggagcacttcaccctgttcgagagc
cggccgggcaacggcggaccggtctatgacccgttgagggaatacccgctggggtga
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