Skermanella mucosa: JL100_031515
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Entry
JL100_031515 CDS
T07652
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smuc
Skermanella mucosa
Pathway
smuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL100_031515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smuc03019
]
JL100_031515
03009 Ribosome biogenesis [BR:
smuc03009
]
JL100_031515
Enzymes [BR:
smuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JL100_031515
Messenger RNA biogenesis [BR:
smuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JL100_031515
Ribosome biogenesis [BR:
smuc03009
]
Prokaryotic type
rRNA helicases
JL100_031515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UEM24184
LinkDB
All DBs
Position
pSM-1:338816..340543
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AA seq
575 aa
AA seq
DB search
MPFPSLDPALLEALSARGYAEPTAVQAAVLQPEVLGRDLLVSAQTGSGKTVAYGLGAAPD
LLEADRGDGRSRPPRMLVIAPTRELALQVGGELEWLYARLGFRIVTCVGGTDMRRERRAL
ADGADVVVGTPGRLRDHLERDGLDATALRVVVLDEADEMLDLGFREDLEAILDETPPERR
TLLFSATVPRGIAALAKRYQRNALRIEATAGGEPHGDIEYRAMLAAPLETERALVNVLRY
FEARGTLVFCATREAVARLQGNLLERGFSAVALSGELGQAERTRALQSLRDGRARVCVAT
DVAARGIDLPDLGLVVHADLPRDPATLLHRSGRTGRAGRKGTCVLLVPHTRRRAAERLLR
DAGVQAAWSAPPAAEEVLARDRERLEREAISLAAEDVSEDDLAVARTLLAERDPERIAAA
LVRALRAPLPAAEELSAGADGGDRRDRSERPEEGGGNGDYARFRINIGRAGNADPRWLLP
FLCRRGHVTRKEIGRIRVFDRETEFEVTSSAAARFVAAIRRKPSGPDGRDGDDGEIRIEP
VRDGGPRRNASARQRDRGPIPPKRPSRAPAPARDA
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgccattcccatctctcgaccccgcgttgctggaagccctgtccgcgcgtggctatgcc
gagccgacggcggtgcaggccgccgtgctgcagccggaggtccttgggcgcgacctgctg
gtctcggcccagaccggttcgggcaagacagtcgcctacggcctgggcgcggccccggat
ctcctcgaagcggacaggggcgacggaagatcccgtccgccccgcatgctggtgattgcg
ccgacacgggaattggcgttgcaggtcggcggcgaactggaatggctgtatgcccggctc
gggttccggatcgtcacctgcgtcggaggcaccgacatgcgccgggaacgtcgcgccctg
gccgacggcgccgacgtggtggtcggaacaccgggacggctgcgcgatcacctggagcgg
gacggcctggatgcaaccgctttgcgggtagtggtgctcgacgaggccgacgagatgctg
gacctcggcttccgcgaggacctcgaggctattctcgacgagacgccgccggagcgccgc
accctgctgttctccgccaccgtcccgcggggcatcgcagccctggccaagcgctaccag
cgcaacgcgttgcggatcgaggcgaccgcgggcggcgagccgcacggtgacatcgagtac
cgtgccatgctcgcggcaccgctggaaaccgagcgcgccctggtcaacgtgctgcgctat
ttcgaggcccgaggcacgctggtgttctgcgctacccgtgaggcggtggcgcggcttcag
ggcaatctgctggagcggggcttctcggccgtggctttgtcgggggaactcggccaggcg
gaacgcacccgggcgctgcagtcgctgcgcgatggccgggcgcgggtctgcgtggcgacc
gacgtggcggcgcgcggcatcgacctgccggaccttggcttggtggttcacgccgacctg
ccgcgcgacccggcgacgctgctgcatcgaagcgggcgcacgggccgggccggccgcaag
ggaacctgcgtcctgctcgtgccgcacacgcgacgccgggccgccgaacgcctcctcagg
gatgctggtgtgcaagccgcctggtccgccccgccggccgccgaggaggtgctggcacgc
gaccgcgagcggctggagcgcgaagcgatatccctcgccgccgaggacgtgtcggaagac
gatctcgccgtggccaggaccctgttggcggaacgcgatcccgagcgcatcgcggccgcc
ctggtacgtgcgctacgcgcgccgctgcccgccgccgaggagctctcggcgggcgctgac
ggcggggatcgacgcgaccggtccgagcgaccggaagagggcggtggcaatggcgattat
gcacggttccggatcaacatcggccgggcaggcaatgccgacccgcgttggctgctgccg
ttcctgtgccgtcgggggcacgtgacccgcaaggagatcggccgcatccgcgtgtttgac
cgcgaaaccgagttcgaggtgaccagcagcgcggccgcccgtttcgtcgcggcgatccgg
cgcaagccatccgggccggacgggcgggacggcgacgacggcgagatccggatcgagccg
gtccgcgatggaggtccgcgccgcaacgcgagcgctcgccagcgcgatcgtggcccgata
ccgccaaagcgcccaagccgggctccggcaccggcccgggatgcgtga
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