Stenotrophomonas muris: ACUVWM_13790
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Entry
ACUVWM_13790 CDS
T11372
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smud Stenotrophomonas muris
Pathway
smud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACUVWM_13790 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smud03019
]
ACUVWM_13790 (rne)
03009 Ribosome biogenesis [BR:
smud03009
]
ACUVWM_13790 (rne)
Enzymes [BR:
smud01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACUVWM_13790 (rne)
Messenger RNA biogenesis [BR:
smud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACUVWM_13790 (rne)
Ribosome biogenesis [BR:
smud03009
]
Prokaryotic type
rRNA processing factors
ACUVWM_13790 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
SE
Motif
Other DBs
NCBI-ProteinID:
YAJ68958
LinkDB
All DBs
Position
2947913..2951170
Genome browser
AA seq
1085 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRIFRIEPSLEAAFVEY
GGGRHGFLPLKEISRDYFQAGVDHNKAGIRELLKEGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLNVWRAIAEAALSKPAPFLIYQESRLIVRALRDYLRADIGEILVDTEEMYEHAR
EFMQQVMPQTLRKLKHYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LANALKYDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHEAPIVIVADEQLHTPH
YTVTRLRENELGEESNKPSYQRGTPRKLPVHALTKGQLNIPPPAVTQVKHTSPAPVREEV
EPAAATPAPVVAAPVAAAPSGGVIGWLKRVFGGEPAPAPAPAAPVARQQQDGGRKDRNKD
RNKDRKDRRDDNRGNGNAQQQKDGGNRKERGEQRKDGRNGNNGNAQQQPQQGRQKEPQQK
DGQQPHQQNKPRNEQQGQNQNQNQQQPKLKQPKQPRQPQDGDKPAEKPQRSTAEAPVEAV
TAAAAVAATAVAANGVTAQEATAPVAPVAPAASAPAEATAPADTTANAGNEAEAIAVTGE
EAAVDANGEQAGEGATRRRRGRRGGRRRRRGGAENAAGSDGLGDDQDDADDSDDTDAADV
AEQSNDSVAGTTPVAAAQPARSQPEFDFDDEVEPTAAESEKPVRAAAAVVAAPVAVVSSA
VVDAAAPVVAEVQAPIDTVAKAEPASSPVQTSMLDAIDAATPAQPVVAAAPAVEAKPVVV
EAAPAVEATPVVEVKPVVESKPEIAEAAPAVEAKPLAVEAAPVVEAAPAVEAKPVVETAP
VAEQPVTPVAVEAAPVEAAAPVADAVVTPSIDPVADGHADAAAQAAEAKADEEDEDAAKR
TPPAN
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggctgaagagctgcgtgttgccatcgtggat
ggccagtcgttgtatgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccggatcttccgcatcgagccctcgctggaagccgccttcgtcgagtac
ggcggtggccgccatggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggtgtcgaccacaacaaggccggcatccgcgagctgctgaaggaaggacaggagatcgtc
gtccaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtttcccga
cgcatcgagggcgaagaccgggccgcgctgaaggacgccctggacaagctgaacattccc
gacgacatgggcgtgatcatccgtaccgccggcgtcggccgcgatgcggaagagctgcag
tgggacctggactacctgctcaatgtctggcgcgccatcgccgaagccgcactgagcaag
ccggctccgttcctgatctaccaggaatcgcgcctgatcgtgcgcgccctgcgtgactac
ctgcgcgccgacatcggcgagatcctggtggacaccgaggagatgtacgagcacgcccgc
gagttcatgcagcaggtgatgccgcagaccctgcgcaagctcaagcattacaaggacgac
atcccgctgttcaaccgcttccagatcgagtcgcagatcgagggcgcctacgagcgcaac
gtgcgcctgccgtcgggcggctcgatcgtggtcgaccagaccgaagcgctgaccgcggtc
gacgtcaattcctcgcgcgccaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaagcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatggcctccaacaagcaccagcgcgaggtcgagaaccgc
ctggccaacgcgctgaagtacgaccgtgcgcgcgtccaggttggccgcatctcgcgcttc
ggcctgctggaaatgagccgccagcgcctgcgcccgagcctgggtgaatccagccagatc
gtctgcccgcgttgcgacggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgttgccgaagagcatgcgatgaaggaaaacaccgggcaggtgctggtccag
gcgccggtggagatcgccaattacctgctgaacgaaaagcgcagtgccctgcgcgagatc
gagcagcgccacgaggcgccgatcgtgatcgtcgccgacgagcagctgcacaccccgcac
tacaccgtcacccgcctgcgcgagaacgagctgggtgaagagagcaacaagcccagttac
cagcgcggcaccccgcgcaagctgccggtgcatgccctgaccaagggccagctgaacatc
ccgccgccggcggtgacccaggtcaagcacacctcccccgccccggtgcgcgaggaagtg
gagccggccgcagcgacaccggccccggtcgtggcagcgccggttgcagcggccccgagc
ggcggcgtgatcggttggctcaagcgcgtgttcggtggcgaaccggcgccggcgccggca
ccggcggctcctgttgcccgccagcagcaggacggcggccgcaaggaccgcaacaaggat
cgcaacaaggaccgcaaggatcgccgcgacgacaaccgtggcaacggcaacgctcagcag
cagaaggatggcggcaaccgcaaggagcgcggtgagcagcgcaaggacggccgcaacggc
aacaacggcaatgcccagcagcagccgcagcagggcaggcagaaggagcctcagcagaag
gacggccagcagccgcatcagcagaacaagccgcgcaacgagcagcagggccagaaccag
aaccagaaccagcagcagccgaagctgaagcagcccaagcagccgcgccagccgcaggac
ggtgacaagccggccgagaagccgcagcgcagcaccgccgaggcaccggtcgaggccgtg
accgcggctgccgccgtggccgccacggcggtcgccgccaatggggtgaccgctcaggaa
gccactgcgccggtggcgccggttgcgccggccgcctccgctccggcggaagccactgca
ccggccgacaccactgccaacgccggcaacgaggccgaggcgattgccgtgaccggtgaa
gaggctgctgtcgacgccaacggcgagcaggccggtgaaggcgcgacccgccgccgccgt
ggccgtcgtggtggccgtcgccgccgtcgtggtggcgccgagaacgctgccggcagcgat
ggcctgggcgatgatcaggacgacgcggacgacagtgatgacaccgatgccgctgatgtc
gccgagcagagcaacgacagcgtcgccgggaccactccggtcgccgctgcgcagccggcc
cgttcgcaaccggaattcgatttcgatgacgaagtcgaaccgaccgctgccgaatccgaa
aagccggtccgtgccgccgccgctgttgtcgccgcgccggtcgcggtggtgagcagcgcc
gtggtcgatgccgctgcaccggtggtggccgaagtacaggcgccgatcgataccgtggcc
aaggccgaaccggcatcttcgccggtgcagaccagcatgctcgatgccatcgacgcggcg
accccggcccagccggtggtggctgcagcaccggcggtcgaagccaagccggtcgtggtc
gaggctgccccggccgttgaagccactccggtggtcgaagtgaagccggtcgtggaatcg
aagccagagatcgctgaagccgctccggcggtcgaagccaagccgctggccgttgaggcc
gccccggtggtggaggccgctcccgcggttgaagccaagccggttgtcgagaccgcaccg
gtcgccgaacagccggtcactccggtggcggttgaagccgcaccggtggaagctgcggcc
ccggtcgccgatgcggtggtgacgccgtcgatcgatccggtcgccgatggtcacgccgat
gccgccgcccaggcggccgaagccaaggccgacgaagaagatgaagacgccgccaagcgc
acgccgccggcgaactga
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