Stenotrophomonas muris: ACUVWM_19315
Help
Entry
ACUVWM_19315 CDS
T11372
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
smud Stenotrophomonas muris
Pathway
smud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACUVWM_19315 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smud03021
]
ACUVWM_19315 (rho)
03019 Messenger RNA biogenesis [BR:
smud03019
]
ACUVWM_19315 (rho)
Transcription machinery [BR:
smud03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACUVWM_19315 (rho)
Messenger RNA biogenesis [BR:
smud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACUVWM_19315 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
YAJ70010
LinkDB
All DBs
Position
4159856..4161601
Genome browser
AA seq
581 aa
AA seq
DB search
MSDNTSETGSADAPAEKRVRKPRVSKAAAPAAAETSAAPAQPTLPLAAAPEAPAPAAAAP
APSAPATEAPASGGGEGGEGRESGQRQQNHQGGGQHQGQGQNNNPYNQNGQQGQGNRRDR
FRNRRDRDRNRGGRDDGMPQDGGEQQPFVPRPHANVPEGFPVYSLSDLKRMPAQKLLEIA
EQLQISEGVARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAEASYLAGPD
DTYISPSQIRRFNLRTGDHISGRIRFPKDGERYFALNIVDTINGEPIEASKNKVLFENLT
ALFPRRRFTLERGNGSSEDITGRILDLMAPQGKGQRSLIVSQPKAGKTMMMQQVATAITT
NHPDVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHK
KDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIA
TALVDTGSKMDEVIYEEFKGTGNSEVHLSRRIAEKRVFPAIDINRSGTRREDLLIEPELL
QKIWILRKLLHPMDEMAAMEFLLDKMKNTKSNDEFFGSMKR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataacacttccgaaaccggcagcgccgatgcgcccgccgaaaagcgcgtgcgc
aagccccgcgtgagcaaggccgccgccccggcagccgccgaaaccagcgccgctccggcg
caaccgaccctgccgctggcagccgcgcccgaagcgccggcaccggctgcagccgccccc
gcgccgagcgcgcctgccactgaagcccccgcctccggcggcggtgagggtggcgaaggc
cgcgaatccggacagcgccagcagaaccaccagggcggtgggcagcaccagggccagggt
cagaacaacaacccctacaaccagaacggccagcagggccagggcaatcgccgcgaccgt
ttccgcaaccgtcgcgaccgcgaccgcaaccgcggtggccgcgatgacggcatgccgcag
gacggcggcgagcagcagcccttcgtgccgcgcccgcacgccaacgtgcccgagggcttc
ccggtctactcgctgagcgacctcaagcgcatgccggcacagaagctgctggagatcgcc
gagcagctgcagatctccgaaggcgtggcccgtgcccgcaagcaggacgtgatcttcgcc
ctgctgaaggtgctgacccgccacggcgacggcgttgccgccgatggcgtgctggaaatc
ctgccggacggcttcggcttcctgcgcgcggccgaagccagctacctggccggcccggac
gacacctacatctcgcccagccagatccgccgcttcaacctgcgcaccggcgaccacatc
tccggccgcatccgcttcccgaaggacggcgagcgctacttcgcgctgaacatcgtcgac
accatcaacggtgagccgatcgaagcgtcgaagaacaaggtgctgttcgagaacctgacc
gcgctgttcccgcgccgccgcttcaccctggagcgtggcaacggttcgtcggaagacatt
accggccgcatcctcgatctgatggcgccgcagggcaagggccagcgctcgctcatcgtg
tcccagccgaaggccggcaagacgatgatgatgcagcaggtcgccactgccatcaccacc
aaccatccggacgtgcacctgatcgtgctgctgatcgacgaacgcccggaagaagtgacc
gaaatgcagcgcaccgtgcgcggcgaggtcatcagctcgaccttcgacgagccggccgcg
cgccacgtgcaggtggccgaaatggtcatcgagcgcgccaagcgcctggtcgagcacaag
aaggacgtggtgatcctgctcgactcgatcacccgcctggcccgcgcctacaacaacgtg
gtgccgagctcgggcaaggtgctgaccggtggcgtggacgccaacgccctgcaccgcccg
aagcgcttcttcggtgccgcgcgcaacgtggaggaaggcggcagcctgaccatcatcgcc
accgcgctggtcgacaccggctcgaagatggacgaggtgatctacgaagagttcaagggc
accggcaacagcgaagtgcacctgagccgccgtatcgctgaaaagcgcgtgttcccggcc
atcgacatcaaccgttccggcacccgccgcgaagacctgctgatcgagccggaactgctg
cagaagatctggatcctgcgcaagctgctgcatccgatggatgaaatggccgcgatggag
ttcctgctggacaagatgaagaacaccaagtccaacgacgagttcttcggctcgatgaag
cgctga
DBGET
integrated database retrieval system
