Candidatus Karelsulcia muelleri TETUND: SMTETUND_011
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Entry
SMTETUND_011 CDS
T03664
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
smue
Candidatus Karelsulcia muelleri TETUND
Pathway
smue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMTETUND_011 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smue03021
]
SMTETUND_011 (rho)
03019 Messenger RNA biogenesis [BR:
smue03019
]
SMTETUND_011 (rho)
Transcription machinery [BR:
smue03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SMTETUND_011 (rho)
Messenger RNA biogenesis [BR:
smue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SMTETUND_011 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA
AAA_14
AAA_22
NACHT
ATPase_2
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AHL31122
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All DBs
Position
complement(14711..15961)
Genome browser
AA seq
416 aa
AA seq
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MFDITEKKSNKYKKIYKTNQIYQIYQIYPLGLKKDFKYEGIVVSEGVLETMTDKYGFLRS
SSTNYLSSTKDVYVSQSQIRLFRMKTGETIRGEVRTPNPKKGEKYFTLKRIFQINGRFPT
SVIKRKSFKKLTPLFPNEKFKISKRKVTLSTRIVDLFSPLGKGQRGIIVAPPKTGKTTLL
KEIANTIAYNHPEVYLIILLIDERPEEVTDMQRNVNGEVVYSTFDEPAEKHVKVANIVLQ
KAKRMVECGHDVVILLDSITRLARAYNTVSPTSGKILSGGVDSNALQKPKRFFGAARNIE
YGGSLSIIATAIIETGSKMDEVIFEEFKGTGNMELQLDRKIANKRIFPAIDLNASSTRKE
EFLLTKYNLNKMFIIRNLLAEMTSEVAIDFIKTRLMKTKNNKEFFQSLKSRNLIKY
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatataactgaaaaaaaaagtaacaaatataaaaagatttataaaaccaatcaa
atttatcaaatttatcaaatttatccattaggattaaaaaaagattttaaatatgaagga
atagtagttagtgaaggagtattagaaacgatgacagacaagtatggctttttaagatct
tcttctactaattatttatcctcaactaaggatgtttacgtttcacaatctcaaataaga
ctttttagaatgaaaacaggtgagactatcagaggagaagtacgaactccaaatccaaaa
aaaggagaaaaatattttactttgaaaagaatatttcaaataaatggacgatttcctact
tctgtaataaaaagaaaatcttttaaaaagttaactccattatttccaaatgaaaaattt
aaaatttcaaaaagaaaagtaactctttctacaagaattgtagatttattttctccttta
ggaaaagggcaaagaggaattatagtagcacctcctaaaactggtaaaacgactttatta
aaagaaatagcaaatacaattgcttataatcatccagaagtatatttaataattctttta
atagatgaaagaccagaagaagtaacagatatgcaaagaaatgttaatggcgaagtagta
tactctacttttgatgaaccagcagaaaaacatgtaaaagtagctaatattgttttacaa
aaagcaaaaagaatggttgaatgtggacatgatgtagtaattttattagattctataaca
cgattagcacgagcatataatacggtatctcctacatctggaaaaattttatcaggaggt
gtagattctaatgctttgcaaaaacctaaaagattctttggtgcagctagaaatattgaa
tatggaggttctctttctataattgctactgcaataatagaaacgggctcaaaaatggat
gaagtaatttttgaagaatttaaaggaacaggaaatatggaattacaattagatagaaaa
attgcgaataaaagaatttttccagctatagatttgaatgcttctagtacaagaaaagaa
gaatttttattaactaaatacaatttaaataaaatgtttattataagaaaccttctggct
gaaatgacgtctgaagttgcaattgattttataaaaacacgtttaatgaaaacaaaaaat
aataaagaattttttcaatctctaaaatctagaaatttaattaaatattaa
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