Sphingobacterium multivorum: I6J00_04020
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Entry
I6J00_04020 CDS
T07579
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
smui
Sphingobacterium multivorum
Pathway
smui03030
DNA replication
smui03430
Mismatch repair
smui03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6J00_04020
03430 Mismatch repair
I6J00_04020
03440 Homologous recombination
I6J00_04020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smui03032
]
I6J00_04020
03400 DNA repair and recombination proteins [BR:
smui03400
]
I6J00_04020
Enzymes [BR:
smui01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I6J00_04020
DNA replication proteins [BR:
smui03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I6J00_04020
DNA repair and recombination proteins [BR:
smui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I6J00_04020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
DUF7508
Motif
Other DBs
NCBI-ProteinID:
QQT45849
LinkDB
All DBs
Position
complement(910886..912358)
Genome browser
AA seq
490 aa
AA seq
DB search
MLCVMSVNQSKRQEFAIVDIETTGGHAKSSRITEVAIIIHDGNQVLERWETLVNPGKEIP
NSIFALTGIDNDMVKDAPLFDQVAEHIYGMLKDRIFVAHNVNFDYSFIRFQLQESGFEWS
AIKLCTVRYARKIKPGLLSYSLGRLCDYLDIPIENRHRAGGDADATAILFAYLKVLDTEQ
VFQDMIKHKALDQRFPPHLNPLEYEQLPNDPGVYYFHDKAGKVIYVGKAVNIKKRVLSHF
TGNNIQAQRQHFLKEIHHISYKCCGTELMSLLLECAEIKKFWPKYNRALKRYEPKFGLFS
YEDQNGYLHLAIGKTTRGQACIQLFQREYDAIQLLQSFIQHDAINPQFCQFGHASLSTKS
IKKTELPDRDLHNTRVERCIEDWLKQQPSYVLIDKGRNSDEKSCIVIENGIFYGMGYMDQ
YGQYSGFEDIKGQVKRYQSNHYMMELVKMAAERHPAKVHFLTKSKILPDVAAEPTFSYEK
LTPNSLFNFY
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgctttgcgttatgagtgtaaatcaaagcaaaagacaagaatttgccattgtggacata
gagactacaggtggccatgcaaaatcgagccggatcaccgaagttgccattattattcat
gatggtaaccaggttttggaacgttgggagaccttggttaatccagggaaagaaattcca
aattcaatttttgcgcttacgggaatagacaatgatatggtgaaagatgctccattattt
gatcaagttgccgaacacatttatggaatgctcaaagaccgtatttttgttgcgcataat
gtaaactttgattattcattcattcggtttcagcttcaggaatcgggcttcgagtggtca
gcaataaaattatgtacagtacgctatgcccgaaaaatcaagcccggattattgtcctat
agtttgggacgtctatgtgattatttagatatcccaattgaaaatagacaccgtgcgggt
ggcgacgccgatgcaacagccattctctttgcttatttgaaagtgctagataccgaacag
gtatttcaggatatgattaaacataaagcgctagaccaacgttttccaccgcatttaaat
cccttggaatatgaacaattgcccaatgatcccggggtctattattttcatgacaaagct
ggaaaagtaatttatgttggcaaggctgtaaatataaaaaaaagagtattgtcccatttt
acagggaataatattcaagcgcaaaggcaacatttcttaaaagaaattcatcatataagt
tataagtgctgcggaactgagctgatgtcattgttattggaatgtgcggaaattaaaaag
ttctggccaaaatataatagggcacttaaacggtatgagcctaaattcggtttattttct
tatgaggaccaaaatggctatctccatctggctatagggaagacgacaaggggacaagca
tgtattcagctgtttcagcgtgaatatgacgctattcagttgctgcaaagctttattcag
catgacgctattaatccgcaattttgtcagtttgggcacgccagtttgtctacgaaatcc
atcaagaagaccgaattgcccgatcgagacctacacaatacccgggtggaacgttgtatt
gaggattggctcaaacagcagccatcgtatgtattgatcgataaaggacgtaattctgat
gaaaaaagttgcattgtcattgaaaatggtattttttatggaatgggatatatggatcaa
tacggccagtacagcgggtttgaagatataaaaggacaagttaaaagatatcagagcaat
cactacatgatggaattggtcaaaatggcagcagaaagacatcccgctaaagtacatttc
ttaacaaaatcaaagattttacctgacgttgcggcagagcccactttctcttacgagaaa
ttgactccgaatagtctatttaatttctattaa
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