Sphingobacterium multivorum: I6J00_04925
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Entry
I6J00_04925 CDS
T07579
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smui
Sphingobacterium multivorum
Pathway
smui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J00_04925 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smui03019
]
I6J00_04925 (recQ)
03400 DNA repair and recombination proteins [BR:
smui03400
]
I6J00_04925 (recQ)
Enzymes [BR:
smui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6J00_04925 (recQ)
Messenger RNA biogenesis [BR:
smui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6J00_04925 (recQ)
DNA repair and recombination proteins [BR:
smui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I6J00_04925 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
RecQ_Zn_bind
HRDC
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
QQT46015
LinkDB
All DBs
Position
complement(1110332..1112521)
Genome browser
AA seq
729 aa
AA seq
DB search
MEIEKSLFDNLQDFFGFDTFKGDQEAIINSILQRRDTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGEDSIAHFLNSSLNKSEITKVKDDVIAGKTKLLYVAP
ESLAKQDNLDFLHQITVSFVAVDEAHCISEWGHDFRPEYRKIRQVINEIGANIPIIALTA
TATPKVQSDIRKNLQMTDAVLFKSSFNRSNLYYEVRPKKDVVKEIVRFIKTKSGKTGIVY
CLSRKKVEEISEVLNLNGIKALPYHAGLDAKTRADTQDKFLMEDVEVIVATIAFGMGIDK
PDVRYVIHHDIPKSMEGYYQETGRAGRDGGDGYCLAFYSEKDVEKLTKFMKDKPVAEREI
GTQILKEVIDYSESAVCRRKQILHYFGENFDEQGCNNMCDNCRSEKEYFEAEDALKDVLG
FIQEQGEKFDDHHVINVMIGQNNQPVSAYKHDEHRLFGKGKDKGVIYWKSLLRQAVLDNF
IEKDIDHYGLLKLPAIGRHYLDNPYQLKFVLNRPIEGGDNTSSEDTGQGTGALDTVLLGM
LKDLRKKIAKGKSLPPFVIFQDPSLEEMCTHYPIAIDELKQIQGVGNGKAIKFGAPFIAL
IKDYVEENEIDRPVDLVIKSTANKSALKVSIIQNIDRKIALDDIASAKGITYEEILKEIE
TIVNAGTKININYFIDEVIDEDRQDEVYDYFKTAETDSINDALKELGGDDYSYEDLQLMR
IKFLSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaaaaatcacttttcgacaatttacaagatttttttggttttgatactttt
aagggggatcaggaggcaattataaacagtattcttcaacggagagacacgtttgtaatt
atgccaaccggaggagggaaatcaatttgctatcaacttccagcactcatgagtgagggg
actgcaattgttatttctccgttgattgctttaatgaaaaaccaagtagatcagcttcgt
gcattcggtggcgaagatagtatcgctcattttttgaattcttcattgaataaaagtgag
attacaaaggttaaggatgatgtaatcgctgggaagaccaaattgctgtatgtcgctccg
gaatctcttgctaagcaagataatttggacttcttacaccaaatcaccgtgtcatttgta
gcggttgacgaagcgcattgtatttccgaatggggacacgattttagaccagaatatcgt
aaaatacgccaggtcattaatgaaataggggccaatattcctattattgcgcttacagcg
acagcaacacctaaagtacagtctgatattcgtaaaaatttgcagatgactgatgctgtt
ttatttaagtcatcatttaatcgtagcaacttatattacgaggtaagacctaaaaaagat
gtcgtaaaagaaattgtacgttttatcaaaaccaaatcgggtaagacgggcattgtctat
tgtttgagccgtaaaaaggtagaagaaatcagtgaggttttgaacctaaatggcatcaaa
gctttaccttaccacgcgggtttagacgccaaaacaagagcagatacacaggataaattt
ttgatggaggatgtcgaagtgattgtggctaccattgcttttggtatgggaatagataaa
cctgatgttcgttatgtgattcaccacgatattcctaaatccatggagggatattatcag
gaaactggacgtgctggacgtgatgggggtgatggttattgcttggctttttattcggaa
aaagatgttgaaaaactgaccaagtttatgaaagataaacctgtggctgaacgtgagatt
ggcacacagatcttaaaagaggttattgattattcggagtctgcagtatgtcgccgtaaa
cagattcttcattattttggagaaaattttgacgagcagggctgtaataatatgtgtgat
aattgtcgttcggaaaaagaatattttgaggccgaagacgctttaaaagatgtattgggc
tttattcaagaacagggtgaaaaatttgatgatcatcacgtgattaacgtcatgatcggc
caaaacaaccaacccgtatccgcctataaacatgatgaacatcgtcttttcggaaagggc
aaagataaaggtgttatttattggaaatccttacttaggcaggcagtgcttgataacttt
atcgaaaaagatattgatcattatggccttttaaaattgccagctattggtcgtcattat
ctggataatccttatcaactaaaatttgttttgaatcgtccaattgaagggggggataat
acaagttcggaagatacaggacagggtacaggggccttagataccgtcttgttgggtatg
cttaaagatttacgtaagaaaattgcaaagggcaagtccctgccgccgtttgttatcttt
caagatccttcgctggaagagatgtgtacacattatccaattgctatcgatgagttgaaa
cagattcagggggtagggaatggtaaagcgattaaatttggtgctccatttattgccttg
atcaaagactatgttgaggagaatgaaattgatagacctgtggatcttgtcattaagagt
acagctaataaatcggcattaaaagtgtctattattcaaaatatcgatcgtaaaattgca
ttagatgatattgcctcagctaaggggataacttatgaagaaatattgaaagaaattgag
acgatcgtaaacgcaggaacgaaaatcaatatcaattactttattgatgaggtcatagat
gaggatcgtcaagatgaggtatatgactattttaagacagcagagactgattcaattaat
gatgcgcttaaagaattaggtggagacgattatagctatgaggatctccaattgatgcga
atcaaatttttatcagaactcggcaattaa
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