Sphingobacterium multivorum: I6J00_06645
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Entry
I6J00_06645 CDS
T07579
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smui
Sphingobacterium multivorum
Pathway
smui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J00_06645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smui03019
]
I6J00_06645
Enzymes [BR:
smui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6J00_06645
Messenger RNA biogenesis [BR:
smui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6J00_06645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
PhoH
DEDD_Tnp_IS110
ERCC3_RAD25_C
HEM4
EB1
Motif
Other DBs
NCBI-ProteinID:
QQT46335
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All DBs
Position
1506073..1507197
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AA seq
374 aa
AA seq
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MEFKQLSLIAPLLKAITETGYTHPTAIQQKAIPVVLQGNDLIGCAQTGTGKTAAFALPLL
QRLEETKTSGKLVPIRALILTPTRELAIQIGDNINLYRKYLKLNYCTIFGGVSQEKQVKE
IKKGVDILVATPGRLLDLMNQKIVSLDKIEILILDEADNMLDMGFIHDIKKILAKVPSKR
QTLFFSATMPPNIRKFAHGILHKPIEVDVTPVSSTAEKVNQSVFFVEKKDKIKLLTSILK
KLKHERTIVFSRTKHGADKIVKLLAKNGLRAAAIHGNKSQNARQKALGEFKDSHLKILIA
TDIAARGIDIEQLPLVINYDLPNVPETYVHRIGRTGRAGQEGKAVSFCDVEERPYLADIE
KLIGLKIKIEKINK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaaacaactcagtttaatcgctccgcttttaaaagcaataacagaaacaggc
tacacacaccccactgcaattcaacagaaagccattccagttgtattgcaaggcaacgat
cttattggttgtgcacaaacgggaacaggcaaaaccgccgcttttgcacttccgctttta
caacgtcttgaagaaactaagacttcaggtaagctcgttccgattagggctttgatcctt
acgccaacacgtgaactagccattcaaattggagacaatataaacttataccggaaatat
ctaaaactaaactactgcactattttcggtggtgtaagccaagaaaaacaagttaaagaa
attaaaaagggcgtcgatattcttgtagctaccccaggccgcttactggatttaatgaat
caaaaaatagtttctctagataaaatcgaaatcttaatattggacgaggcggacaatatg
ctggacatgggctttattcatgacatcaaaaagatcctggccaaagttccgtcaaaacga
caaacattattcttctcggcaacgatgccacccaatatccgtaaatttgcacatggcata
ttacataaacctattgaagttgacgtcaccccggtaagctcaacggccgagaaagtcaat
caatctgtattttttgttgaaaagaaggataagataaaattattgacgagcatactaaaa
aagctgaagcatgagcgtaccattgtcttctcccgaacaaaacatggagcggataaaatc
gttaagttacttgcgaaaaatggtttgagagcagcagccattcacggaaataaatctcaa
aatgcgagacaaaaagcgctaggtgaatttaaggacagtcatcttaaaatattgatcgct
accgatattgctgcaagaggaattgatatcgaacaactcccccttgtgattaattatgat
ctccctaatgtaccggaaacctacgttcatcgcatcggaagaacaggaagagctggacag
gaaggaaaagccgtttctttttgcgatgtagaagaaagaccatatttagctgatattgaa
aaattaatcggactaaaaatcaaaatagaaaagatcaataaatag
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