Sphingobacterium multivorum: I6J00_15240
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Entry
I6J00_15240 CDS
T07579
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smui
Sphingobacterium multivorum
Pathway
smui03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6J00_15240 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smui03400
]
I6J00_15240 (mfd)
Enzymes [BR:
smui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6J00_15240 (mfd)
DNA repair and recombination proteins [BR:
smui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6J00_15240 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SUB1_ProdP9
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QQT43115
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All DBs
Position
3521919..3525254
Genome browser
AA seq
1111 aa
AA seq
DB search
MGIQEILEKYSQSETVQSLTKALQSKNPKIQLKGLIGSSDAFIAVSSYNLQERPMVFILP
THEDASYFLSDLESLLDKQVLFFPSSYRKAFDFTQTDSANVLQRAETLSSLNHTSELPKM
VVTYPEAIAEKVINRNDLDKNTLEITENTALSIDFINEFLIEYDFERVDFVYEPGQFAIR
GGIVDIFSFSNDLPYRIEFFGDDIESIRTFDIESQLSVKKIHKVTIVPNVQAKFLTSQHI
SLLEYVDQDATIWIKDAQFTLDIVKDGLKKAEKLWAGLTDKQKKDNPEWHNPAYEFTDEK
NLNALFFEFPIIEFGKQFFYKAEATFKFDIHPQPSFNKDFNLLIHNFKENESQRIQNLIF
SDSTKQVERIYTILEDLDKSATFIPIHKALREGFRDDSLKLACYTDHQIFDRYYKYKRKK
AYERSQAITLKDLRDLKPGDFITHIDHGVGRYGGLEKVDVNGKSQEMIRLIYADNDLLYV
NINSLNRISKYSGKEGTVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIMLYAKRKAQHGN
AFSPDSYLQNELEASFIYEDTPDQEKATADVKKDMESPHPMDRLICGDVGFGKTEVAIRA
AFKAVADSKQVAVLVPTTILALQHYRTFSERLKGLPCTIDYINRFKTSKQIKDTLARLAE
GKIDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPR
TLHFSLMGARDLSIISTPPPNRQPVQTELHVFNETLIGEAVSYELDRGGQVFFIHNRVAD
LPQLGNLIRKLVPGARVGVAHGQLEGDELEDVMLKFINHDFDVLIATTIIEAGLDIPNAN
TIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTPEAYKRLSAIEEFSELGS
GFNVAMRDLDIRGSGNLLGGEQSGFIAEIGFEMYHKILDEAIQELKEDEFSAVFADEKER
KYVSFTQIDTDLEVLIPDEYVTNITERYNLYTELSKLENEQQLAAFEKELEDRFGPIPRE
VFELFNTLRLQWFGKTIGFEKIAYKKHTLKGYFVNNPKSSYFESDQFGRVLSFVQSHPEI
SNLKEVKGQLRLALNNVNTIGYALSLLKEML
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
gtgggaattcaagaaatattagaaaaatacagccaaagcgaaactgttcagtcgcttacc
aaggctttacaatccaaaaaccccaagattcagttgaaagggcttattggttcttcggat
gcattcatagccgtatcttcttacaacttacaggaacgtccaatggtctttatcttaccg
actcatgaagacgcttcttattttttaagtgacctggaaagcctgttggataagcaggtt
ctttttttcccttcgtcttaccgcaaagcatttgattttacgcaaacggactccgccaat
gtattgcaacgtgcggagacattaagttcgctcaatcatacgtcggaattaccgaaaatg
gttgttacttatccagaggctatcgcggagaaagtgatcaaccgcaacgacctggataaa
aacaccttagaaataacagaaaacacggcgctaagtattgatttcatcaacgaatttttg
atcgaatatgatttcgaacgtgtcgactttgtgtatgaaccaggacaatttgcgatacgc
ggtggcattgtagatatcttttctttttcgaatgacctcccataccgtattgaattcttt
ggcgacgacatcgaaagcatacgtacatttgacattgaatcgcagctgtctgtcaaaaaa
atccacaaagtaaccattgtaccaaatgttcaagcgaagttcctgacatcccaacacatt
tctttattggaatatgtagatcaggacgctacaatctggatcaaagacgctcaatttacg
ttagatattgtgaaagatgggttaaagaaagcggaaaaattatgggcggggttaaccgat
aagcagaaaaaggataatccggaatggcataatccagcctatgaatttacagacgagaaa
aacctcaatgcgttattttttgagtttcccattatcgaattcggcaaacagttcttttat
aaagctgaagccacgttcaagttcgatatacatccccaaccttcattcaataaagatttt
aatctcttaatccataatttcaaagagaatgagagccagcggattcagaatctgatcttt
tcagattcgaccaaacaggtcgaacgcatctatacgattctggaagatctcgataaatca
gccaccttcattccgattcataaagcgttacgcgaaggttttagagacgacagtttaaag
ttagcctgttacacggatcaccagatatttgaccgttattataaatataaacgtaagaag
gcttacgagcgctcacaggcaattacgctcaaagatctacgagatcttaaaccgggcgat
ttcattacacacattgaccatggtgtcggccgctacggaggtttggagaaagtagatgtc
aacggtaagtctcaggaaatgatccgcttgatctatgcggacaatgatcttttgtatgtg
aacatcaactctttaaaccgtatttccaaatattccggtaaggagggaactgttcccaaa
atgaataaattgggtaccgacgcctgggacaaactcaagaagacgaccaagaaaaaagtc
aaggatattgcgcgcgacttgatcatgctttatgccaaacgaaaggcacagcatggaaat
gcgttctcaccggatagctacctacagaatgagctggaggcctcctttatttatgaagat
acacccgatcaggaaaaggctactgccgatgtgaaaaaagatatggaatcgccacatccg
atggaccgattgatctgtggggatgtaggcttcggaaaaacggaggttgccatccgtgca
gccttcaaagctgtagcagacagtaaacaagttgctgtcctggtaccgacgactatcctg
gcattacagcactaccggacattttcggagcgtctaaagggtcttccatgcacgatcgac
tatatcaaccgtttcaagacgagcaaacagatcaaagataccttagccaggctcgctgaa
ggaaaaatagacattatcattggtacacaccgccttgttagcaaagatgtcaaattcaaa
gatctcggcctgatgattatcgatgaggaacaaaagtttggggtctcggtcaaggaaaaa
ttgaaagtcatgcgtgcgaatgtagactcgctaacattgacagcaacgccaattccaaga
acattgcacttttcattgatgggggcccgcgatctaagtatcatctcgactccaccaccc
aaccggcagcccgtacagaccgaactccatgttttcaatgaaacactaatcggagaggcc
gtcagttacgaacttgatcgtggcgggcaggtattctttatccacaatcgtgttgcagat
ctaccgcagctgggcaatttgattcgcaagctggttcccggagcacgggtcggtgtggca
catggccaacttgaaggggatgaacttgaggatgtgatgctcaagtttatcaatcacgat
tttgatgtcttaattgcaacaacgattattgaagcgggtcttgatatcccaaatgcgaat
acgatcattatcaatcacgcccatatgtttggactgagcgacctgcaccaaatgcgaggt
cgggtgggccgctccaataagaaagctttttgttatctactgagtccgccattgtcgacc
ttaacaccggaagcctataaacgactttctgcaatagaagagttttcggaactgggctct
ggatttaatgttgccatgcgcgatttagatatacgtggctcgggaaatctcttgggaggc
gagcaatcgggctttattgccgagatcggtttcgaaatgtatcataaaatcttagacgaa
gctattcaggaactaaaagaggacgagttttcggcagtattcgcggatgagaaagaacga
aaatatgtgtcctttacgcagattgacactgaccttgaggtattgatccctgatgaatat
gtaaccaatattacagaacggtataatctgtatactgaactctccaaattggaaaacgag
cagcaattggcagcctttgaaaaagaacttgaagatcgctttggccctatcccacgcgaa
gtctttgaattattcaatacactccgtttacagtggtttgggaagacgatcgggtttgaa
aaaatagcgtataaaaagcatacattgaaaggttattttgtcaataaccccaaatccagc
tactttgaatcagatcaattcggccgtgtgctgtcctttgtacaaagccatcccgagatc
agcaacctcaaagaagtcaaaggccagcttcgtttagcgttaaataatgtgaataccatt
gggtatgcgttgagcctgctgaaagaaatgttgtaa
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