Sphingobacterium multivorum: I6J00_21605
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Entry
I6J00_21605 CDS
T07579
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smui
Sphingobacterium multivorum
Pathway
smui03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smui00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6J00_21605 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smui03021
]
I6J00_21605 (rpoC)
03400 DNA repair and recombination proteins [BR:
smui03400
]
I6J00_21605 (rpoC)
Enzymes [BR:
smui01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6J00_21605 (rpoC)
Transcription machinery [BR:
smui03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6J00_21605 (rpoC)
DNA repair and recombination proteins [BR:
smui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6J00_21605 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
MC1
Motif
Other DBs
NCBI-ProteinID:
QQT44292
LinkDB
All DBs
Position
4942250..4946527
Genome browser
AA seq
1425 aa
AA seq
DB search
MSYKKDNKIKSNFTSITISLASPETILERSSGEVTKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDMIIYYERYVVIQAGIKEEDGINFMDFLTEEEYLDILDTLPKENQYLDD
NDPQKFVAKMGAEALEDLLKRIDLDQLSYDLRHQAANETSQQRKNEALKRLHVVEAFRSS
RENIENRPEWMIVKIVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPHLKLHECGLPKDMAAELYKPFIIRKMIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPTLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAVLEAQILMLGAHNILNPANGSPITVPSQDMVLGLYYITKGRRTAGDHIVR
GQDMTFYSAEEVIIALNEKQIDLHAWIKVKTKVRQKDGSIVDTLLETTVGRVIFNQVVPD
EMGFVNELLTKKSLRNIIGEIVKTTGMARAAQFLDDMKELGYQTAFKGGLSFNLEDLNIP
AAKAELIQQATNEVEEVMNNYNMGFITNNERYNQIIDIWTRINNRLTAHVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGTSGGEIIENPILSNFKEGLSVLEY
FISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVVEQDCGGLRGIYTTALKDNDDVV
EPLFDRILGRTPLHDVLHPDTDELIVSANEDITEEIAETIEKAGIEGIEIRTVLTCESKR
GVCACCYGRNLASGKRVQLGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAADSSIIS
KYDGKIEFENVRTVSQTNDNGTHQVVLGRSGEVKIIDAHNKIVFQQNIPYGSQLFVEDGG
TVAKGDKLVEWDPYNAVIISEFAGKVEFDAIIEGVTFREESDEQTGHKEKVIIETRDKTK
NPSIKILDKSGEVIRTYNIPVGAHVAVANGVTVKEGGILVKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREMSIESRDGQIKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILSIKGPSAVQHYIVNGIQEVYRLQGVKINDKHFETIVHQMMQK
VNIEDPGDTRFLEKEAVNKWDFMEENDSLFDKKVVVDAGDSNNLRPGQIVSLRKLREENS
SLKRRDLKLVEVREAIPATSSPLLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NLLGLKENVIVGHLIPSGTGIRQYSNLIVGSREEYDQLLASKEED
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaagataataaaattaaaagcaacttcacttcgattacgatcagcttg
gcttctccagaaactattttggaacgctcaagtggtgaagttacaaaaccggaaacgatt
aactatcgtacctacaaaccagaacgtgacggtttattctgtgagcgcatttttggtcct
gtgaaggactacgaatgtcactgtggtaaatacaaacgtatccgttataaaggtatcgta
tgtgaccgttgtggtgttgaagtaactgagaaaaaagtacgtcgtgagcgtatgggacac
atcaatttggttgttcctgttgcacacatctggtacttccgttctcttcctaataaaatt
ggttatttattgggacttcctaccaagaaattggatatgatcatttactacgaacgttat
gtggttatccaagctggtattaaagaagaagatggtatcaactttatggacttcttgact
gaagaagaatatttagatattttagataccttaccaaaagaaaatcaatatttagacgat
aacgatcctcaaaaattcgttgccaagatgggtgctgaggcgttagaagatttgttgaaa
cgtattgatttggatcaattgtcatacgatttacgtcaccaagctgctaacgaaacttct
caacaacgtaaaaatgaagcgttaaaacgccttcatgtggttgaggctttccgtagttca
cgtgaaaatatcgagaatcgtccagaatggatgattgtgaaaatcgttccaatcattcca
cctgaattacgtcctttagtgcctttggatggtggtcgttttgcgacttcggatttgaat
gacttatatcgtcgtgtgattatccgtaacaaccgtctaaaacgtttgatcgaaatcaag
gctcctgaagtaatcttacgtaacgaaaaacgtatgcttcaagaagcggtagactctttg
tttgacaactcacgtaaagtgaacgctgttaagacagaaggtaaccgtgcattgaagtct
ttatctgatattttgaaaggtaaacaaggtcgtttccgtcaaaacttgttaggtaagcgt
gtggattattcggctcgttcggtaattgttgtaggtcctcacttgaaattacacgagtgt
ggtcttcctaaagatatggctgcagaactttacaaaccgtttatcattcgtaagatgatc
gagcgtggtattgtaaaaacagtaaaatcagctaaaaaaatcgttgatcgtaaagatcct
gtggtatgggatatccttgaaaatgtattgaaaggtcaccctgtattgctaaaccgtgca
cctacgcttcaccgtttgggtattcaggctttccaacctacattagtagagggtaaagct
attcaattacacccattagtgtgtacagcgttcaacgccgattttgacggtgaccagatg
gcagtccacttaccgcttggtaatgctgcagttttggaagcccaaatcttaatgttaggt
gcgcacaatatcttaaaccctgcgaatggttctccaatcacagtgccatctcaagacatg
gtattgggtctttactatattactaaaggccgtagaactgctggcgatcacatcgtaaga
ggtcaagatatgactttctattcggctgaagaggttatcatcgctttaaatgagaagcaa
attgaccttcacgcttggattaaagtaaaaacaaaagttagacaaaaagatggtagcatc
gttgataccttattagaaacaactgtaggtcgtgtgatcttcaaccaagttgttcctgac
gaaatgggatttgtcaatgaattgcttacgaaaaaatctttgcgtaatatcatcggtgaa
attgtgaagactacgggtatggcccgtgcagcacagttcttggatgatatgaaagaattg
ggatatcaaacggccttcaaaggtggtctttcgttcaacttggaagatttgaacattcct
gctgcgaaagctgaattgattcaacaagcaactaacgaggttgaagaagtaatgaataac
tataacatgggtttcattacaaacaacgaacgttacaaccaaatcatcgatatctggacg
cgtatcaacaacagattgacggcacacgttatggatattctttcgaatgataaccaagga
ttcaactcagtttacatgatgttggattctggagcccgtggttcgaaagagcagatccgt
cagttatgtggtatgcgtggtttgatggcgaaacctcaaaaatcaggtacttctggtggt
gagattatcgaaaacccgatcttgtcaaactttaaagaaggtttgtccgtattggagtac
tttatctctacccacggtgcgcgtaaaggtcttgccgatacagcattgaaaacagcggat
gcgggttacttgacacgtcgtttacatgacgtagcgcaagatatgatcgttgtggaacaa
gattgtggtggtttacgtggtatttatacaacagcattgaaagataatgatgatgttgtt
gaaccattgttcgatcgtattttgggtcgtacaccattgcatgatgttcttcatccggat
actgacgaattgatcgtttctgcaaatgaagatatcactgaggaaattgccgaaactatc
gaaaaagcaggtatcgaaggaattgagattcgtacggtattaacttgtgagtctaagcgt
ggtgtttgtgcttgttgttacggacgtaacttggcgtcaggtaagcgtgttcagttaggt
gaagctgtgggtgttatcgccgctcaatcaattggtgagccaggtacacagttgacactt
cgtacattccacgtgggtggtacggcatcgaacattgctgctgattcaagtatcatttct
aaatacgatggtaaaatcgaatttgaaaacgtacgtactgtttctcaaacaaacgataat
ggcacacatcaggtagtcttaggacgttctggtgaggttaagatcattgatgcacataat
aaaatcgtattccaacaaaatatcccttatggttcacagttgttcgttgaggatggcggt
acagtagctaaaggcgataaattggtcgaatgggatccatataatgcagtaattatttct
gaatttgctggtaaagttgaatttgacgcaattatcgaaggtgttaccttccgtgaagag
tcagatgagcaaactggtcacaaagagaaggtaattattgaaacacgtgataaaacgaaa
aacccatccatcaagattcttgataaatcgggagaggttattcgtacctacaatatcccg
gtaggcgcccacgttgcagttgctaatggtgtaacagtgaaagaaggtggtatcctcgtt
aaaatccctcgttctacaggtaaaacgcgagatatcacaggtggtctaccacgtgtaacg
gagttattcgaagcacgtaacccttctaaccctgctgtagtaacagaaatcgacggtgtg
gtaacattgggtggtgtgaaacgtggtaaccgtgagatgtctatcgagtctcgtgatggt
caaatcaagaaatacttggtacctctttctaaacatatccttgttcaggataatgacttt
gtgaaagctggtatgccattatcagatggttcgatctctcctgcggatatcttgtcgatc
aaaggtccatcagcagtgcaacattacattgtgaatggtatccaagaggtataccgtctg
caaggtgtgaagatcaacgataaacacttcgagacgatcgttcaccaaatgatgcaaaaa
gttaacatcgaagatccaggagatactcgtttcttagaaaaagaagccgttaacaaatgg
gatttcatggaagaaaatgattctttgtttgacaagaaagttgttgttgatgcaggggac
tctaataatttacgtccgggacaaattgtttctttacgtaagttgagagaagagaactct
agtctgaaacgtcgtgacttaaaacttgttgaagttcgtgaagcaattccggctacttca
agtccattgttgcaaggtattaccagagcttcattgggtacgaaatcgttcatctctgct
gcctctttccaagagactacaaaagtgttgaacgaggctgctatcgcaggtaaacgtgat
aacttattaggtttgaaagaaaacgtaattgttggtcacttgatcccttctggtacaggt
atccgtcaatacagcaatttaatcgtgggctctcgcgaggagtacgatcaattgttggct
tcgaaagaagaagattaa
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integrated database retrieval system
