Sphingobacterium multivorum: I6J00_24380
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Entry
I6J00_24380 CDS
T07579
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smui
Sphingobacterium multivorum
Pathway
smui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J00_24380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smui03019
]
I6J00_24380
03009 Ribosome biogenesis [BR:
smui03009
]
I6J00_24380
Enzymes [BR:
smui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6J00_24380
Messenger RNA biogenesis [BR:
smui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6J00_24380
Ribosome biogenesis [BR:
smui03009
]
Prokaryotic type
rRNA helicases
I6J00_24380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QQT44800
LinkDB
All DBs
Position
complement(5632880..5634745)
Genome browser
AA seq
621 aa
AA seq
DB search
MNPFLELGIREEVVNAISELGFEKPSEIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLEQLDFSQKHPQALILCPTRELCLQISKDLEKFAKYVDNVHVVAVYGGANISDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFKEDINNILSETPDEKKT
WLFSATMPAEVRRIAKNYMTDPVELTVGTKNTGNANIEHHYYLIKAKDKYAAFKRIVDSN
PDIFGIVFCRTKIETQDIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATD
VAARGIDVSDVTHVINFSLPDETENYTHRSGRTARAGKTGISLSLVNVKELSKIRHLEKI
IGKPFEKKQVPQGAEVCEKQLFSIVKKIENVEVNDEQISPFLPAIMENLESLSKEDIIKR
FASLEFNRFLDYYKNAPDLNIEARDGGREDRGDRRDGRSREGSKGYTRLFMNLGSVDEFS
RGDMLGFICNNANISGKSIGKIDLKGVFTFFEVQDAEVEKVFQGFQGVDYNGRQVRIEVS
GEARGEGRSDRGGRSRGGRREGGYRGGDRGGRREGGYGGGERSGRREGGFSGERRDRGER
SSNGGGFRDFSGKRKESKSKY
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagaactgggaatccgtgaggaagttgttaatgccatctcagaatta
ggtttcgaaaaaccttctgaaattcaggaaaaagccattcctgttttattgactggtaac
gacgattttgtcggattagcccaaactggcacaggaaagaccgcggcatttggtcttcca
ttattagagcaattagacttttctcaaaaacacccacaggcattaattctttgccctact
cgggaattatgtttacaaatctcaaaagatttagaaaaatttgctaaatacgttgacaac
gtacatgttgttgctgtatatggaggtgcaaatatctcagaccagctacgtcaaattaga
cgtggagtgcaaattgtagtagcgaccccaggtcgtatgttggatatcatcggcagaaat
gcgattgatttttcaaatgtaaaatatgttgtattggatgaagcggatgagatgctcaat
atgggcttcaaagaagacatcaacaacattttgtcagaaactcctgacgagaaaaaaact
tggttattttcggcgacaatgcctgctgaggtacgtcgtatcgcaaagaattatatgacc
gatccagttgagcttactgtaggtacaaaaaacaccggtaatgccaacattgaacaccac
tattatttgatcaaagcaaaagataaatatgctgcattcaaacgtattgtggattcaaac
cctgatatctttggtatcgtattttgtcgtacaaaaatcgaaacacaggatatcgctgaa
gcgttgattaaagatggttacaacgctgattcactgcatggcgacttgtcccaacaacaa
cgtgataaagttatgaaacgttaccgtgaccgtagtttacaattattgatcgcaacagac
gtcgccgctcgtggtattgatgtaagtgatgtaactcacgttatcaatttctctttacct
gatgaaacagaaaactatacgcaccgttctggccgtacagcccgtgcaggtaaaactggt
atttcgctttctttggtaaacgtaaaagagctaagcaaaatccgtcatcttgaaaaaatc
atcggtaagccttttgagaaaaaacaagtacctcaaggtgctgaagtttgcgaaaaacaa
ttgttctctatcgttaaaaagattgaaaatgttgaagtaaacgatgaacaaatcagtcca
ttcttgcctgcaattatggaaaatttggaatcactttcaaaagaagatatcatcaaaaga
ttcgcttctcttgagttcaaccgtttcttggattattacaaaaatgcacctgatttaaat
atcgaagcgcgtgatggtggtcgtgaagaccgcggtgatagacgtgatggtcgttcacgt
gaaggttcaaaaggctacacgcgtttatttatgaacttaggttcagtagatgaattctct
cgtggagacatgttaggctttatctgtaacaatgcgaatatttcaggaaaatcaatcggt
aaaattgatttgaaaggtgtgttcacattcttcgaagttcaagatgcagaagtagaaaaa
gtattccaaggattccaaggtgtagattacaatggtcgtcaagtacgtatcgaagtatct
ggtgaagctagaggagaaggtcgtagcgaccgtggtggaagaagccgtggcggaagacgt
gaaggtggataccgtggtggagatcgcggtggaagacgtgaaggtggatatggtggcggc
gaacgcagcggaagacgtgaaggcggattcagtggtgagcgtcgtgatcgtggtgagcgt
agcagcaatggcggtggcttccgtgatttctctggaaaacgtaaagaatcaaaaagcaaa
tactag
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