Sulfurospirillum multivorans: SMUL_0117
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Entry
SMUL_0117 CDS
T03049
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
smul
Sulfurospirillum multivorans
Pathway
smul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMUL_0117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smul03019
]
SMUL_0117
Messenger RNA biogenesis [BR:
smul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMUL_0117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AHJ11400
UniProt:
A0AA86DYG5
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Position
116922..118805
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AA seq
627 aa
AA seq
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MNPNQNPNPNAPKDASGEPSEKKPRNNRRRKSNKSPTATIEGNEPWQRDMKKAIEANQKM
HKDRLNRSNLLDQTSKGKIKITPLGGLGEIGGNICVFETETSAIVLDVGMSFPSEDMHGV
DILIPDFSYLRQIKKKIAGIIISHAHEDHIGALAYLFKEMQFPLYATPLPLGMIANKFDE
HGLKGHKKYFRPVEKRKIYKIGEFEVEWIHITHSIIDASSIAITTEAGTIIHTGDFKIDH
TPIDGYVTDLNRFASYGEKGVLCLMSDSTNSYKEGITRSESTVGKTFDSIFSKAKGRVIM
STFSSNIHRVYQAIDYGLKYGRKVSVIGRSMERNLFTAIDLGYIELDKSIFIDPHEVNKY
PDKDVLIVTTGSQGETMSALYRMATDEHRHVKIKPTDQIIISAKAIPGNEGSVSKVLNFL
LKSGANVAYQDFSEIHVSGHAAQEEQKLILRLVKPRFFLPVHGEYNHITKHKETAMQCGI
SERNIVLMSDGDQIEVCSKYIKKIKTVKTGKVFIDNQINEQIADDVVIDRQKLADSGLVM
LVIQLDKSDHKLISKPKIISYGLVPDRDDKAFSIEMEGVIDQFVANAKKELLENARALEN
EVRQVVRKHIYRTMKKYPTIVPTIFMM
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccctaaccaaaatccaaacccgaatgcacccaaagatgcttctggtgagccaagt
gagaaaaagccacgcaataatagaagacgcaaaagcaataaatctcctaccgcaaccatt
gaggggaatgagccttggcaacgtgatatgaaaaaggcaattgaagccaaccaaaaaatg
cacaaagataggttaaatcgctcaaatttgcttgaccaaacatccaaaggaaagattaaa
atcacacctcttggaggattgggtgaaatcggcggaaacatctgtgttttcgagactgag
acatcagccattgttcttgatgttggtatgagctttccaagtgaagatatgcacggtgtg
gatatcttaatacctgattttagctatttgcgccaaattaagaaaaaaatagctggaatt
attatttcacatgcccatgaagatcatattggcgcactggcttatttattcaaagagatg
cagtttccactctatgcgacgccattgcctcttggtatgatcgcaaataaatttgacgaa
cacggtcttaaaggtcacaaaaaatattttagacctgttgaaaaacgcaaaatctataaa
attggtgagtttgaagtagagtggatacacattacgcactcaattattgacgcttcttct
attgccattaccacagaagctggaacaatcattcatacgggtgattttaagatcgatcat
acccccattgatggttatgtaacggatcttaaccgctttgcctcttacggtgaaaaaggg
gttctttgtttgatgagtgatagtaccaactcttataaagagggcattacgcgtagcgaa
agtactgttggaaaaacatttgattctattttttccaaggcaaagggtcgtgttattatg
tctactttttcgtcaaatattcatagggtttatcaagcgattgattacggtttaaaatac
ggcagaaaagtctcagttattggtcgttcaatggagcgaaatctctttacggcaattgat
cttgggtatatagagctggataaaagtatctttattgatccacatgaggtcaataaatac
cctgataaagatgttttgattgtcaccacaggaagccaaggcgagacgatgagtgcactg
taccgaatggctacggatgaacaccgacatgttaaaattaagccaaccgatcagatcatc
atctctgcaaaagcgatcccaggcaatgaagggagtgtctcaaaggttctcaactttttg
cttaaaagtggtgcgaacgtagcgtatcaagatttcagtgaaattcacgtgagtggacac
gccgcgcaagaagagcaaaagctcattttacgtttggttaagccacgctttttcctcccc
gttcacggcgaatacaatcacatcaccaaacacaaagagacagcgatgcaatgtggtatt
tctgagcgaaatatcgtcttaatgagcgatggtgatcaaattgaagtgtgttcaaaatac
atcaaaaagattaaaaccgtcaaaacaggcaaggtgtttattgataaccaaatcaatgag
cagattgcagatgacgttgtgattgatcgtcaaaaattagcagattctggtttggttatg
ttagtgattcagctcgataagagtgatcataaacttatttctaagccaaaaatcattagt
tatggtttggtgcctgatcgtgacgacaaagcattctccattgagatggaaggtgttatt
gatcaatttgttgcgaatgccaaaaaagagcttcttgagaatgcacgagcccttgaaaat
gaagtacgccaagtggtgcgtaaacatatctatcgtacaatgaaaaaatacccaacgatc
gttccaacgatctttatgatgtag
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