Simonsiella muelleri: BWP33_11485
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Entry
BWP33_11485 CDS
T05344
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smur
Simonsiella muelleri
Pathway
smur03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smur00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BWP33_11485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smur03021
]
BWP33_11485
03400 DNA repair and recombination proteins [BR:
smur03400
]
BWP33_11485
Enzymes [BR:
smur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BWP33_11485
Transcription machinery [BR:
smur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BWP33_11485
DNA repair and recombination proteins [BR:
smur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BWP33_11485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AUX62357
UniProt:
V9HKP1
LinkDB
All DBs
Position
2318403..2322605
Genome browser
AA seq
1400 aa
AA seq
DB search
MNLTDLFAPLQQAGSEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFCA
KIFGPVKDYECLCGKYKRLKYKGVTCEKCGVEVTLTKVRRERMGHIELAAPVAHIWFLKS
LPSRLGMVLDMTLRDIERVLYFEAFVVTDPGLTSLQRRQLLTEEDYYAKLEEYGEEFDAH
MGAEGVRELLRSLNVEQEIENLRQELQSTSSDTKIKKIAKRLKVLEAFQRSGMKLEWMIM
DVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRML
QEAVDSLLDNGRRGKAMTGASKRPLKSLSDMIKGKSGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFKPFIFHKLEKRELATTVKAAKKLVEQEVPEVWDILEEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLAPANGEPIIVPSQDIVLGLYYMTRAKEKEIGEGTLFADVKEVHRAYHT
KQVKLGTKITVRLREWVKNDAGEFEPVMKRYNTTVGRALLSEILPKGLPFSYIDTALKKK
AISKLINASFRLCGLRDTVIFADHLMYTGFALAAKGGISIAVDDMEIPKEKAQLLAEAQA
EVKEIEDQYHQGLVTSGERYNKVVDIWGTAGDKIAKAMMDNLSTQPVLNPETKEVYQDEN
GTPLMEESFNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITANFREGLTVL
QYFIATHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTEGFSMKAVVQGGD
ITEPLRDRILGRVAAEDVVDHSTGVTIVEAGTMFDEKLVDLIDNSGVDEVKVRTPITCQT
RYGLCAKCYGRDLARGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQV
EAKSNGTVRFGSQMRYIANSKNELVIIGRSSEIIILDQVGRERERHKVPYGATLKVQDGE
ELKAGTVLATWDPHTNPVISEYGGKVELENFEEGVTVTKQTDDVTGLSQYVVIDGKRRST
SKLLRPTVKLLDSNGEYVNIPGTNTPVAIAFSVGSIIQIREGQEIGKGEVLARTPQASTK
TRDITGGLPRVAELFEARVPKDAGILAEVTGVVSFGRETKGKQRVIITDMDGVAHETLIS
KEKQVLVHDAQVVNRGETIVDGPVNPHDILRLKGIEELTRYIVQEVQEVYRLQGVKISDK
HIEVIIRQMLRRVHITDAGDTHFITGEQVERADVMIANEQAIAEGKEPARFDNVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLSYHRSRRA
SWAAAQRAMVASSGSDEREA
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaccgatttattcgcacccctgcaacaagcaggttcagaagaatttgatgcc
attaaaattggcattgcctcgcctgaaaccattcgttcatggtcttacggtgaagtcaaa
aaacccgaaaccattaactatcgtacgttcaaacctgaacgcgatggtttgttctgtgcc
aaaattttcgggccagtcaaagactatgagtgtttgtgtggcaaatacaaacgcttgaaa
tataaaggcgtaacttgcgaaaaatgtggcgtagaagttaccctaaccaaggttcgccgc
gaacgcatgggtcatattgaattggctgcgcctgtggcacacatttggtttttgaaatcc
ttaccctctcgcttgggcatggtgttggatatgactttgcgcgatattgagcgtgtgttg
tattttgaagcatttgtggtaacagacccaggtttaaccagcctgcaacgccgtcaatta
ttgaccgaagaagattactacgccaaattagaagaatatggcgaagaatttgatgcacac
atgggtgccgaaggcgtgcgcgaattgttacgcagcctgaatgtggaacaagaaattgaa
aacttgcgccaagaattgcaatcaaccagcagcgacaccaaaatcaaaaaaattgctaag
cgtttgaaagtattggaagcattccaacgttctggcatgaaattagagtggatgattatg
gatgtattgcctgtcttgccacctgatttgcgcccactcgtgccattggacggtggtcgt
tttgcgacttccgatttgaacgacttgtatcgccgtgtgattaaccgtaacaaccgtttg
aaacgcttgttggaattgcgcgcgccagacatcatcgttcgcaacgaaaaacgtatgttg
caagaagcagtagatagtttgttagacaatggtcgccgtggcaaagccatgactggtgca
agcaaacgtccattgaaatctttgtctgacatgattaaaggtaagagtggtcgtttccgt
caaaacttgctgggtaaacgcgtggactactctggtcgttctgtgattaccgtaggtcca
tacttgcgtttgcaccaatgcggtttgccgaaaaaaatggcgttggaattgttcaaacca
tttattttccataaattggaaaaacgtgaattggcgactactgttaaggcagccaaaaaa
ttggtagagcaagaagtaccagaagtttgggacatcttggaagaagtgattcgtgagcac
ccaattttgttaaaccgtgcgcctactttgcaccgtttgggtattcaagcatttgagccg
attttgattgaaggtaaagcgattcagttacatccattggtgtgcgcggcgtttaacgcg
gactttgacggcgaccaaatggcagttcacgttccattgagtttggaagcgcaaatggaa
gcgcgtaccttgatgttggcatcaaacaacgtactcgcgccagctaacggtgagccgatt
attgtgccatcgcaagatattgtcttgggtttgtattacatgactcgcgccaaagaaaaa
gaaattggtgaaggcacattgtttgctgatgtcaaagaagttcatcgcgcctaccacacc
aaacaagtgaaattgggtacaaaaattaccgttcgtttgcgtgaatgggtcaaaaatgac
gcaggcgaatttgaacctgtgatgaaacgctacaacactacggtcggacgtgcgttgctg
tctgaaattttgcctaaaggtttaccatttagctacattgatactgcattaaagaaaaaa
gcaatttctaaattaattaatgcgtcattccgtttgtgtggtttgcgcgataccgtgatt
tttgccgaccacctgatgtatacaggtttcgcattagcagcgaaaggtggtatttctatt
gccgttgatgacatggaaattccaaaagaaaaagctcaattgctggctgaagcccaagca
gaagtcaaggaaattgaggaccagtaccatcaaggtttggtaacttcaggcgaacgctac
aataaagtagtggatatttggggtacagcaggcgataaaattgccaaagcgatgatggat
aatttgtccacgcagcctgttcttaatccagaaaccaaagaagtttatcaagatgaaaat
ggtacgccattgatggaagagtcgtttaactcaatttacatgatggctgactcgggtgcg
cgtggttcggcggcacagattaaacaattgtcgggtatgcgtggtttgatggcgaaacct
gacggctcaattattgaaacacctattacggcaaacttccgtgaaggtttgacggtattg
caatactttattgcaacgcacggtgcgcgtaaaggtttggcggataccgcgttgaaaacg
gcaaactctggttacttgactcgccgtttggtggacgtaacgcaagatttggtggtggtg
gaagacgactgtggcacaaccgaaggtttcagcatgaaagctgtggtacaaggtggcgac
attaccgaaccattacgcgaccgtattttggggcgtgtggcggctgaagacgtggtcgat
cacagtacgggcgtaaccatcgtagaagcaggtacgatgtttgatgagaaactggttgat
ttaattgataattcgggtgtggatgaagtaaaagttcgtacgcccattacttgtcaaaca
cgttatggcttgtgtgcgaaatgttatggtcgtgatttggcacgcggtaaattggttaat
gcaggtgaagcggttggtgtgattgctgctcagtctattggtgagccaggtacacaattg
acaatgcgtaccttccacattggtggtgcagcatctcgtgcggctgcagccagccaagta
gaggccaaatctaatggtacggtgcgttttggtagccaaatgcgctatattgcgaattct
aaaaatgaattagttattattggtcgttcatctgaaatcattattcttgaccaagtggga
cgtgaacgtgaacgccacaaagttccttatggtgcaacgttgaaagtacaagatggcgaa
gaattgaaagctggtacggttttggcaacttgggatccacataccaaccctgttatcagc
gaatatggcggtaaagttgaactggaaaactttgaagaaggcgtaaccgttactaaacaa
accgatgatgttacaggtttatcacaatatgttgtgattgatggtaaacgtcgctcaacc
agcaaattgctgcgcccaactgtaaaattattggatagcaatggcgaatacgtgaatatt
cctgggacaaatacacctgtggcaattgctttttcagtgggttctattatccaaattcgc
gaaggtcaagaaattggcaaaggtgaagtactggcgcgtaccccgcaagcatccaccaaa
acacgtgatattacaggtggtttaccgcgtgtagctgaattgtttgaagcgcgtgttccg
aaagatgcaggtattttggctgaagtaacaggcgtggtgtcatttggtcgtgaaaccaaa
ggcaaacaacgtgttattatcacggatatggacggcgttgcgcatgaaaccttgatttct
aaagaaaaacaggttttggttcatgatgctcaagtagtaaatcgtggtgagaccattgtt
gatggaccagttaatccgcacgacattttacgcttaaaaggtattgaagaattaacacgt
tatattgtgcaagaagtacaggaagtttaccgcctgcaaggggtgaaaatttctgataaa
cacattgaagtgattattcgccaaatgttgcgccgtgtgcatattactgatgcgggcgac
acccatttcattacaggtgaacaagtggaacgcgctgatgtgatgattgccaatgaacaa
gcaattgcagaaggcaaagaacctgcacgatttgataatgtgttgttgggtatcacaaaa
gcatctttgagtacggacagtttcatttcggcggcatcattccaagaaaccactcgtgtt
ttgactgaagcggcgattatgggtaaacgtgatgatttacgtggtttgaaagaaaatgtg
attgtgggtcgtttgattccagcaggcacaggtttgagttaccatcgcagtcgtcgcgca
agctgggcagccgcacaacgtgctatggttgcatcgtctggtagcgatgagcgtgaagct
taa
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