Staphylococcus muscae: C7J88_09390
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Entry
C7J88_09390 CDS
T06215
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smus
Staphylococcus muscae
Pathway
smus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7J88_09390 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smus03019
]
C7J88_09390 (rnr)
03016 Transfer RNA biogenesis [BR:
smus03016
]
C7J88_09390 (rnr)
Enzymes [BR:
smus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C7J88_09390 (rnr)
Messenger RNA biogenesis [BR:
smus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7J88_09390 (rnr)
Transfer RNA biogenesis [BR:
smus03016
]
Prokaryotic type
tRNA degradation factors
C7J88_09390 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
RNase_II_C_S1
Rho_RNA_bind
Spt6_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AVQ34365
UniProt:
A0A240BXS0
LinkDB
All DBs
Position
1925668..1928007
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AA seq
779 aa
AA seq
DB search
MNLKQEILNLIQEDDYRAMSVSDFQDALGLSSAESFRDLIKVLNELEQTGIVTRTKQDRY
QKKGPKPGLVKGTLSQNKKGFAFLRPEDEMMEDIFIPPSKVNYAMEGDTVVVEVQKSRGD
YRKGKFEGEVKAIERHAVQQVVGTFSEARHFGFVIPDDKRIMQDIFIPKGQDLGAVEGHK
VLVQITQYSDGTNNPEGQVSAILGHKNDPGVDILSIIYQHGIDIEFPEDVLKEAEAVPES
IKPEEIKGRRDLRDDLTITIDGADAKDLDDAIALKQIDNGHIELTVSIADVSYYVTEGSA
LDREAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTMSCRMEINKRGEVVKHEIF
DSVIHSDARMTYDAVNEIITEKNPTIRQQYAEVTPMLDLAQTLSNRLIEMRKRRGEIDFD
IPEAQVQVNGEGIPEDVVIRTRGEGERLIESFMLAANETIAEHFNKKDVPFLYRIHEQPK
SERLRQFFDFITNFGMMIKGTGEEIHPSTLQRISEEVTGRPEDRVISTMMLRSMQQARYE
ADNLGHFGLAADYYTHFTSPIRRYPDLIVHRLIRKYLIEQSMDGKAMRRWEDALPEIATH
TSNRERRAIEAERDTDELKKAEYMIQHIGDEFEGVISSVANFGMFIELPNTIEGLVSIQN
MTDDYYNFDEHHMALIGEHKAKVYRIGDTIKVKVVHVDVDERQIDFQVVGMPIDLKGGRD
KKQQGKTIQIKTKGNQFKGKNDCKKKRKQRKGKNERQKTKHKPFYKDKSIKKKARRKKK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaaacaagaaatattaaacctaattcaagaagatgattatcgtgcgatgtct
gtttctgactttcaagatgcactcggtttgagtagtgcggagtcatttcgtgacttgatt
aaagttttaaacgagttagaacaaacaggtattgtgacacgtacaaagcaagatcgatac
caaaagaaaggtcctaagccaggattggtaaaggggactttgagtcaaaataaaaagggc
tttgcatttttacgtcctgaagatgaaatgatggaggatatttttatcccaccaagtaaa
gtgaactatgcgatggagggtgatacggtcgttgttgaagtacaaaagtctcgtggtgat
tatagaaagggtaagtttgaaggagaagtcaaagcaattgaacgtcatgccgttcaacaa
gttgttggaacattctctgaagcgcgccatttcggttttgtgattccagatgataaacgc
attatgcaagacatttttatcccgaaaggacaagacttaggtgccgtcgaaggtcacaaa
gtattagtacagattacacaatactcagacggtacgaataacccagaaggacaagtgtct
gcaattttagggcataaaaacgatccgggtgtagatattttatcaatcatctatcaacac
gggatcgacattgaatttccagaagatgtgttaaaagaagcggaagctgtaccagagtca
atcaaacctgaagaaattaaggggcgtcgtgatttaagagatgatttaacgattactatt
gatggtgcagacgctaaagaccttgatgatgcgattgccttgaaacaaatagacaatggt
catattgaactaactgtaagtattgccgacgtaagctattatgtgacagaaggaagcgca
ctcgaccgtgaagcgtatgatcgtgcgacaagtgtgtaccttgtggaccgtgtgattccg
atgatcccacatcgtttaagcaatggtatctgttcattgaatcccaacgtggatagactg
acaatgagttgtcgtatggaaattaataaacgtggtgaagttgttaaacacgagattttt
gatagtgtgatccattcagatgcccgtatgacgtatgacgcagttaatgaaattattacc
gaaaaaaatccaacaattcgtcaacagtatgcagaagtgacaccgatgttggatttagca
caaacactctcaaatcgtttaatcgaaatgcgtaaacgccgtggtgagattgactttgat
attcctgaagcacaagtacaggtaaacggtgaagggattccagaagatgtcgttattcgt
acacgtggtgaaggggaacgtttaattgaatcatttatgttagcggcgaatgagacgatt
gctgaacatttcaataaaaaagatgttccattcttatatcgtattcatgaacaaccgaag
tcagaacgtctacgtcaattttttgacttcattacaaacttcggcatgatgataaaagga
actggtgaagaaattcatccaagtacattacaaagaatttctgaagaagtgacagggcga
ccagaagatcgagtcatttcaacaatgatgctacgctcgatgcaacaagcacgatatgaa
gcggataatcttggacactttgggttggctgcggattattatacacacttcacatcacca
atcagacgttatccggacttaatcgtccatcgcttaattcgaaaatatctcattgagcag
tctatggatggcaaggcaatgcgtcgttgggaagatgcgctaccagagattgcgacgcat
acgtctaaccgtgagcgtcgtgcgattgaagcagaacgcgatacggatgaattgaagaaa
gccgagtacatgattcaacatatcggtgatgagtttgaaggggttattagttctgttgcc
aacttcggtatgtttattgagttgccgaatacgattgaagggcttgtcagcattcaaaat
atgacagatgactattacaactttgatgaacatcatatggcattgattggagaacataaa
gcgaaagtctatcgcattggtgacacaatcaaagtaaaagtcgtacatgttgatgtggat
gaacgtcaaatcgacttccaagtagtaggaatgccaatcgacttgaaaggcggtcgtgat
aagaaacaacaaggaaaaacaatccagatcaaaacgaagggcaatcaattcaaaggtaaa
aatgactgtaagaagaaacgtaaacagcgcaaaggtaagaatgaacgtcaaaaaacgaaa
cacaagccgttttacaaagataaaagtatcaaaaagaaagcccgaagaaagaaaaaataa
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