Streptococcus mutans GS-5 (serotype c): SMUGS5_08950
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Entry
SMUGS5_08950 CDS
T02185
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smut
Streptococcus mutans GS-5 (serotype c)
Pathway
smut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMUGS5_08950 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smut03021
]
SMUGS5_08950 (rpoB)
03400 DNA repair and recombination proteins [BR:
smut03400
]
SMUGS5_08950 (rpoB)
Enzymes [BR:
smut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMUGS5_08950 (rpoB)
Transcription machinery [BR:
smut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMUGS5_08950 (rpoB)
DNA repair and recombination proteins [BR:
smut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMUGS5_08950 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFM82260
LinkDB
All DBs
Position
complement(1854526..1858089)
Genome browser
AA seq
1187 aa
AA seq
DB search
MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDTGLKEVFEDVLPISNFTD
TMELEFVGYELKEPKYTLEEARAHDAHYSAPIFVTFRLINKETGEIKTQEVFFGDFPLMT
EMGTFIINGAERIIVSQLVRSPGVYFNDKVDKNGKIGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVRNTIEKDIHKNPNDSRTDEALKE
IYERLRPGEPKTADSSRSLLIARFFDARRYDLAAVGRYKINKKLNVKTRLLNQVIAENLV
DPETGEILVEAGTEMTRSVIDSIADYLDGDLNKIVYTPNEYAVLTEPVVLQKFKVMAPND
PDRTVTVIGNASPDDKVRHLTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGELL
ANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFIQTPYRKVDRETGKVTNEIEWLTADEEDEFTVAQANSKLNEDGSFAEEIVMGRH
QGNNQEFPASSVEYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAP
FVGTGMEYQAAHDSGAAIIAQHNGKVVYSDADKIEVRREDGSLDVYHVTKFRRSNSGTAY
NQRTLVRVGDSVEKGDFIADGPSMEKGEMALGQNPVVAYMTWEGYNFEDAVIMSERLVKD
DVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVCDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIHIATPVFDGATSDDLWETVKEAGMDSDAKTVLYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTITQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDKDDKEVDLRDLDEGEDDDVMHVDDLEKAREKQALEAAEFANSDEK
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgaagttcagtacgggaaacatcgtacgcgtcgtagtttttcaagaatc
aaagaggttcttgatttaccaaatttgattgaaatccaaacggactcttttaaagatttc
ttggatacaggtctgaaggaagtttttgaagatgtgcttccaatttccaatttcacagac
actatggaattagagtttgtgggttatgagttgaaagagcctaagtatacattggaagaa
gcacgtgctcatgatgcacattattctgcccccatctttgttactttccgtctcatcaat
aaagaaactggtgaaattaagacacaagaagtattttttggtgattttcccttgatgact
gaaatgggtacttttattattaatggtgctgaacgtattatcgtttctcagttggtacgt
tcaccaggtgtttattttaatgataaagtggataaaaatgggaaaattggctatggttca
actgttatccctaaccgcggtgcttggcttgagcttgaaacggactctaaggatattgct
tatactcgtattgatcgtactcgtaaaattccttttacgacgctggttcgtgcactcggt
ttttccggggatgatgagattattgatatttttggtgatagcgaattggttcgtaatacc
attgaaaaagatatccataaaaatcctaatgactctcgtacagatgaagctctcaaggaa
atttatgaacgtcttcgtccgggtgaacctaagacggcagattcttcacgcagtcttctg
attgcacgtttctttgatgcgcgccgttatgatttagcagctgttggccgctataagatt
aataaaaagttaaacgtcaaaacgcgtcttttgaatcaagtcattgctgaaaacttagta
gatcctgaaacaggcgaaattcttgttgaagctgggactgaaatgacacgcagtgtaatt
gattcgattgcagattatcttgatggagatctcaataaaattgtttatacgccaaatgaa
tacgctgttttgacagaacctgttgttcttcaaaaattcaaagttatggctccaaatgat
ccagaccgcacggttactgttattggtaatgccagtccagatgacaaagtacgtcacttg
acaccagccgatattttagctgaaatgtcttatttccttaacttggctgagggtctaggt
aaagttgatgatattgaccatttaggcaaccgacgtattcgtgctgttggtgaattgcta
gctaatcaatttcgtattggtttggcacgtatggaacgcaatgttcgtgaacgtatgtcc
gttcaagataatgaagtcttaacaccacaacagattattaacattcgccctgtaacagcg
gcaattaaagagttctttggttcttctcaattatcacagttcatggatcaacacaatcca
ctgtctgaattgtctcataaacgccgtttgtctgctttaggtcctggtggtttaacacgc
gaccgtgctggttatgaagtccgtgatgtgcactatacgcattatggtcgtatgtgtcca
attgaaacgcctgagggaccaaatattggattgattaataacttgtcttcctatggtcat
cttaataaatatggatttatccaaacaccataccgtaaagttgaccgtgagacaggtaaa
gtaaccaatgaaattgaatggcttactgctgatgaagaagatgaattcactgtagctcag
gctaactcaaaacttaatgaagatggaagctttgctgaagaaatcgtcatgggacgtcat
caagggaataaccaagagtttccagcaagttctgttgaatatatggatgtttctcctaag
caggtagttgcggtagcgacagcatgtattcctttccttgaaaatgatgactccaaccgt
gcccttatgggagctaacatgcagcgccaagctgtgccattgattgatcctaaagcacct
tttgttggaactggtatggaatatcaagcagcccatgattctggggccgctattatcgct
caacataatgggaaagtggtttattccgatgcagataagattgaagttcgccgtgaagat
ggctcactagatgtttatcatgttaccaaattccgtcgttctaactctggaactgcctac
aatcaacgtactcttgttagggtaggcgatagtgttgagaagggggactttattgcagat
ggtccttctatggaaaagggtgagatggctcttggacaaaatccagtggttgcttacatg
acttgggagggttacaactttgaagatgctgttatcatgagcgagcgtcttgtcaaggat
gatgtttatacttctgtccatttagaagaatttgaatctgaaactcgtgatacaaagctt
ggacctgaagaaattacgcgtgaaatcccaaatgttggtgaagatgccctgaaagacctt
gatgaaatgggaattattcgcattggtgctgaggttaaagaaggtgatattctagttggt
aaagtgactcctaaaggagaaaaagatctttctgcagaagaacgcctcttacatgccatt
tttggtgacaaatcacgtgaagttcgtgatacttctcttcgtgtacctcatggtggcgac
ggtgttgtttgtgatgtgaaaatctttacacgtgctaatggagatgaacttcaatcaggt
gttaacatgctggttcgtgtttatatcgctcaaaaacgtaaaatcaaggtcggagataag
atggccggacgtcatggtaataagggtgtcgtttcccgtattgtaccagtggaagatatg
ccatatcttccagatggaacacctgttgatatcatgcttaatccacttggggtgccatca
cggatgaacattgggcaagttatggaactccatcttggtatggctgctcgtaatttgggc
attcatattgcaacgcctgtctttgacggagcaacttctgatgatctttgggaaacagta
aaagaagccggtatggattctgatgctaaaactgttctttatgatggtcgcacaggggag
ccgtttgataatcgtgtatcagttggtgttatgtatatgattaaacttcaccatatggtt
gatgataaattgcatgcacgttcagttggtccttattcaacgattactcaacagccgctt
ggtggtaaggctcaatttggtggtcaacgtttcggagaaatggaagtttgggctttggaa
gcttatggtgcctcaaacgttcttcaagaaattttaacttataagtcagatgatgtcacc
ggtcgtcttaaagcctatgaagctattacaaaaggtaagccaattccaaaaccaggggta
ccagaatcattccgtgtacttgtgaaagaactgcaatcacttggacttgatatgcgcgtt
cttgataaagatgataaagaagtagatcttcgtgatcttgatgaaggcgaagatgatgat
gttatgcatgttgatgatcttgaaaaggcgcgtgaaaaacaagcacttgaagctgctgaa
tttgcaaatagtgatgagaaataa
DBGET
integrated database retrieval system
