Candidatus Karelsulcia muelleri Sulcia-ALF: SULALF_005
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Entry
SULALF_005 CDS
T02783
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
smv
Candidatus Karelsulcia muelleri Sulcia-ALF
Pathway
smv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SULALF_005 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smv03021
]
SULALF_005 (rho)
03019 Messenger RNA biogenesis [BR:
smv03019
]
SULALF_005 (rho)
Transcription machinery [BR:
smv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SULALF_005 (rho)
Messenger RNA biogenesis [BR:
smv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SULALF_005 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA
AAA_22
ATPase_2
AAA_25
Spore_III_AA
AAA_24
Mor
PBP1_TM
NACHT
Motif
Other DBs
NCBI-ProteinID:
AGS33300
LinkDB
All DBs
Position
complement(6209..7345)
Genome browser
AA seq
378 aa
AA seq
DB search
MQNEYKFEGLVISEGVLEIMPEHYGFLRFNYLSSDDDDDDDDDDDDDDDDDDDVYVSQSQ
IRLFGIKPGDTIRGEVRTPKNGEKYFPLIKIFQINGRFPSSIIFRKSFKHLTPLFPNEKF
KISEKKVTLSTRIVDLFSPIGKGQRGIIVAPPKTGKTTLLKEIANTISYNHTEVYLIILL
IDERPEEVTDIQRNVNGEVEVVSSTFDEPAEKHVKVASIVLQKAKRMVECGHDVVILLDS
ITRLARAYNTVSPTSGKVLSGGVDSNALHKPKRFFGAARNIEDGGSLSIIATAIIETGSK
MDEVIFEEFKGTGNMELQLDRKIANKRIYPAIDLVASSTRKEELLLNDNTLKTIFFLRKR
LSEMTSIEAIEYIIFRLK
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatgaatataaatttgaaggtctagtaattagtgaaggagtattagaaataatg
cctgaacattatggattcttaagatttaattatttatcatcagatgatgatgatgatgat
gatgatgatgatgatgatgatgatgatgatgatgatgatgtttacgtatcacaatctcaa
ataagactttttggaattaaacctggtgatactataagaggagaagttcgtactcctaaa
aacggagaaaaatattttcctttaatcaaaatcttccaaatcaatggacgttttccttct
tctatcatttttcgaaagtcttttaaacatttaactccattatttcctaatgaaaaattc
aaaatttcagaaaaaaaagtaactctttctacaagaattgtagatttattttctcctata
ggaaaaggccaaagaggtattatagttgcacctcctaaaactggaaaaacaactttatta
aaagaaatagcaaatacaatatcttataatcatacagaagtctatttaataattctttta
atagatgaaagaccagaagaagttacagatatacaaagaaacgtaaatggggaagtagaa
gtagtatcttcaacttttgatgaaccagcagaaaaacatgtaaaagttgctagtattgtt
ttacaaaaagcaaaaagaatggttgaatgtgggcatgatgtagttattttactagattct
ataacacgtttagctagagcatataatactgtttctcctacatctggtaaagttttatca
ggaggagttgattctaacgcattacataaacctaaaagattttttggggctgctagaaat
attgaagatggtgggtctctttctataattgctacagcaattatagaaactggatcaaaa
atggatgaagtaatatttgaagaatttaaaggtacaggtaatatggaactacaattagat
agaaaaattgcgaataaaagaatatatccagctatagacttagttgcttctagcacaaga
aaagaggaattattattaaatgataacacattaaaaacaattttttttctcagaaaacgt
ctttctgagatgacttcaatagaggctattgaatatataatatttcgtttaaaataa
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