Serratia marcescens WW4: SMWW4_v1c04370
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Entry
SMWW4_v1c04370 CDS
T02448
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smw
Serratia marcescens WW4
Pathway
smw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMWW4_v1c04370 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smw03019
]
SMWW4_v1c04370 (deaD)
03009 Ribosome biogenesis [BR:
smw03009
]
SMWW4_v1c04370 (deaD)
Enzymes [BR:
smw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMWW4_v1c04370 (deaD)
Messenger RNA biogenesis [BR:
smw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMWW4_v1c04370 (deaD)
Ribosome biogenesis [BR:
smw03009
]
Prokaryotic type
rRNA helicases
SMWW4_v1c04370 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AGE16244
LinkDB
All DBs
Position
496175..498097
Genome browser
AA seq
640 aa
AA seq
DB search
MTTEFETSFADLGLSAPIISALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLQADLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDLYRALLTKLQPEEELDME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRRGDRGDRRDSRDGDRPRRERRD
VGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEIL
NHFTRTRILNKPMNMQLLGDAQPFERRERRDGGNGGERRGNGRPFNGERREGGPRRSFGE
RREGGNGGERRGGNYNRDGKPAPRRDDGAPAAPRRRFGDA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgagtttgaaacctcttttgccgatctggggctgtctgctccaatcatttcc
gccctgaacgatctgggctatgaaaaaccatctccgatccaggctgagtgtattcctcac
ctgttgaacggccgcgacgtgctgggcatggcgcagaccggtagtggtaaaactgcagcg
ttctcgctgccgctgctgcacaacctgcaggcagacctgaaagcacctcagatcctggtg
ctggcgccgacccgcgaactggcggttcaggttgctgaagcgatgaccgatttctccaaa
cacatgaacggcgtcaacgtggtagccctgtacggcggccagcgttacgacgtgcagctg
cgcgctctgcgccagggcccgcaaatcgttgtgggtaccccaggccgcctgctggatcac
ctgaagcgcggcaccctgaacctctccaacctgagcggcctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggctgagatcccggct
gaacatcagaccgcgctgttctccgccaccatgccggaagcgatccgtcgcatcacccgc
cgcttcatgaaagagccgcaggaagtgcgcatccaatccagcgtcaccacccgtccggac
atcagccagagctactggtcggtctacggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagccgaagactttgacgcggcgatcatcttcgtccgtaccaagaacgcgaccctg
gaagtggccgaagcgctggagcgcagcggttacagcagcgccgcgctgaacggcgacatg
aaccaggcgctgcgtgagcagactctggagcgtctgaaagacggtcgtctggatatcctg
atcgcgaccgacgttgcggcccgtggcctggacgttgagcgcatcagcctggttgtcaac
tacgacatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgcg
ggccgcgctggccgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
atcgaacgcaccatgaagctgaccatcccggaagtggaactgccgaacgcagaactgctg
ggcgagcgtcgtctggccaagttcgccgcgaaagttcagcagcagctggaaagcagcgat
ctggacctgtatcgcgcactgctgaccaaactgcaaccggaagaagagctggatatggaa
actctggccgcagcgctgctgaaaatggcacagggcgaacgtccgctgatcctgccgccg
gatccggtcttcaagccgcgtcagcgccgcgagttcaacgaccgtgacgatcgtcgcggt
gatcgtggcgaccgtcgtgacagccgtgacggcgatcgtccgcgtcgcgaacgtcgtgac
gttggcgaaatgcagttgtaccgcatcgaagtgggccgtgacgatggcgttgaagtgcgt
cacatcgttggcgctatcgctaacgaaggcgacatcagcagccgttacatcggtaacatc
aagctgttcgcttcccactccaccatcgagctgccaaaaggcatgccgggcgagatcctg
aatcacttcactcgcactcgcatcctgaacaagccgatgaacatgcagctgctgggcgat
gcacagccgttcgaacgtcgcgagcgtcgtgacggtggcaacggcggcgagcgtcgcggc
aacggtcgtccgttcaacggcgaacgtcgcgaaggcggcccacgtcgctccttcggcgaa
cgtcgtgaaggcggcaacggcggcgagcgtcgtggcggtaactacaaccgtgacggcaag
ccggcgccacgccgtgatgacggcgcaccggcggcaccacgtcgtcgtttcggcgacgcg
taa
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