Serratia marcescens WW4: SMWW4_v1c07330
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Entry
SMWW4_v1c07330 CDS
T02448
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
smw
Serratia marcescens WW4
Pathway
smw00061
Fatty acid biosynthesis
smw00071
Fatty acid degradation
smw01100
Metabolic pathways
smw01212
Fatty acid metabolism
smw02024
Quorum sensing
smw04146
Peroxisome
Module
smw_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SMWW4_v1c07330
00071 Fatty acid degradation
SMWW4_v1c07330
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SMWW4_v1c07330
09145 Cellular community - prokaryotes
02024 Quorum sensing
SMWW4_v1c07330
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
smw01004
]
SMWW4_v1c07330
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smw04147
]
SMWW4_v1c07330
Enzymes [BR:
smw01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SMWW4_v1c07330
Lipid biosynthesis proteins [BR:
smw01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SMWW4_v1c07330
Exosome [BR:
smw04147
]
Exosomal proteins
Exosomal proteins of breast milk
SMWW4_v1c07330
Exosomal proteins of breast cancer cells
SMWW4_v1c07330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
AGE16540
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All DBs
Position
821829..823637
Genome browser
AA seq
602 aa
AA seq
DB search
MITNLLQYHLIHRIQHQITHRADRTAFRQWSPNGEFQLTWGAAAARIDRIAAGLLALGAE
VQERIGIFANNTVAWSLTDLAILHLRGVSVPLYSTNTPAQAAFVINDADIRILFVGEQAQ
LDAAIALRGVCPQLSYIIVFDEGADLRGCEIAQHLSAFERAADPAAFIAQRRQRIEECDL
QDLFTLIYTSGTTGEPKGVMLDYRNLAAQLYLHDERLTVGEEDVSLSFLPLSHVFERAWS
FFVMHSGAQNVFLPNTDWVREAMGQVRPTLMCAVPRFYEKIFSAVHEKVARAPWLRRALF
HWAIVCGERKFLQERAGKPLGKLFELSHRWADKLVLSKLRGILGGRVRFLPAAGAKLDDN
VILFFQAMGVNIKYGYGMTETCATVSCWEEGHFRFGSIGKPLPEVEVRIGEENEIQVRGP
IVMRGYFNKPLETAATFTADGWLKTGDAGAIDEEGNLFITERLKDLMKTSGGKYIAPQML
EGTLAQDRFIEQVAIIADARKFVSALIVPCFESLEEYAKSVNLKYQDRLELLRNGEILAM
FEKRLREMQKELARFEQVKKFTLLPAAFSMELGELTPTLKLRRKVILQRYQREIDSMYQE
QA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgatcactaatctgctgcaataccatttgatccatcgtatacagcatcaaatcacccac
cgagccgatcgcacagcatttcgccaatggtcgcccaacggcgagtttcaactgacctgg
ggagcggcggctgcccgcattgatcgcattgctgccgggctgctggcgctgggcgccgaa
gtgcaagaacgtatcggtatcttcgccaataacacggtggcctggtcgttgaccgatctc
gcgatcctgcacctgcgtggcgtcagcgtaccgctctattccaccaatacgccggcgcag
gcggccttcgtcatcaacgacgctgacattcgcatcctgttcgtcggcgagcaggcgcag
ctggatgccgccatcgcactgcgtggcgtctgcccacagctgagttatatcatcgtgttc
gacgagggcgccgatctgcgcggctgcgagatcgcacaacacctgagcgccttcgagcgc
gctgccgatccggcggcttttatcgctcaacgtcggcagcgcattgaagagtgcgacctg
caggatctctttaccctgatctatacctcgggcaccaccggcgaaccgaaaggggtcatg
ctggactaccgcaacctggcggcgcagctctacctgcacgatgagagactgacggtcggc
gaagaggatgtgtcgctcagtttcctgccgctgtcgcacgtgttcgagcgtgcctggagc
ttctttgtcatgcattccggcgcgcagaatgttttcctgccgaacaccgactgggtacgg
gaagcgatggggcaggtgcggccgacgttaatgtgcgcggtaccgcgtttctacgagaag
attttcagcgcggtgcatgaaaaagtggcgcgtgccccttggctgcgccgtgcgctgttc
cactgggcgatcgtctgcggggagcgcaagttcctgcaagagcgggccggcaaaccgttg
ggcaaactgttcgaactctctcaccgctgggccgacaagctggtattgagcaagctgcgc
ggcattctcggtggccgggtgcgtttcttgccggcggcgggcgccaagctggatgacaat
gtgatcctgtttttccaggcgatgggcgtcaacatcaagtacggctacggcatgaccgaa
acctgtgcgaccgtgtcctgctgggaagaggggcatttccgcttcggctctatcggtaaa
ccgctgccggaggtcgaggtgcgcatcggtgaagaaaatgaaattcaggtgcgcgggccg
atcgtgatgcgcggctatttcaacaaaccgttggaaaccgccgcgacctttaccgccgac
ggctggctgaaaaccggcgacgccggggcgatcgatgaagagggcaatctgttcatcacc
gagcgcctgaaagatttgatgaaaacctccggcggcaaatacatagcgccgcagatgctg
gaaggcacgctggcgcaggaccgctttatcgagcaggtggcgatcatcgccgatgcgcgc
aagttcgtttccgcgctgatcgtgccgtgctttgagtcgctggaagagtacgcgaagtca
gtcaacctgaaataccaggatcgcctggagctgctgcgcaacggcgagatcctcgcgatg
ttcgaaaagcgcctgcgcgagatgcaaaaggagctggcgcgtttcgagcaggtgaagaag
ttcacgctgctgccggcggctttttccatggagttgggggagctgacgcccacgctgaag
ctgcgccgcaaagtgatcctgcagcgctatcagcgcgaaatcgactcgatgtaccaggaa
caggcctga
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