Serratia marcescens WW4: SMWW4_v1c13000
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Entry
SMWW4_v1c13000 CDS
T02448
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smw
Serratia marcescens WW4
Pathway
smw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMWW4_v1c13000 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smw03019
]
SMWW4_v1c13000 (rhlE)
Enzymes [BR:
smw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMWW4_v1c13000 (rhlE)
Messenger RNA biogenesis [BR:
smw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMWW4_v1c13000 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
UvrD-helicase
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AGE17104
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All DBs
Position
1440851..1442230
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AA seq
459 aa
AA seq
DB search
MSFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHPVKGRRPVRALILTPTRELAAQIGENVDAYSKHLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPTIKAEPIINGRQGGGRGAPRGNGGGQRSGNGGGQRSGNAN
GGQRENRGNANGNARPQGDGQRRSGAPSSRRPRNRKPAE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttaagtgctgaaattgtgcgcgctgttgaagaacagggc
tatcgtgaaccgacgccaatccagcgtcaggctatccctgtcgtgcttgaaggtcgtgac
ctgatggccagcgcccagaccggcaccggtaaaaccgccggttttaccctgccgctgttg
cagctgctgagcaagcatgaccatccggtcaagggccgtcgcccggtgcgcgcgctgatc
ctgacgccaacccgtgagctggcggcgcagatcggcgaaaacgtcgatgcctacagcaaa
cacctgcgcctgcgttcgctggtggtgtttggcggcgtgagcatcaacccgcagatgatg
aagctgcgcggcggcgtcgatatcctggtggcgacgccgggccgtctgctggatctggag
catcagaacgcggttgacctgtccaaaatcgaaattctggtgctggatgaagcggaccgc
atgctggacatgggctttatccacgacattcgccgcgtgctggccaagctgccggccaag
cgccagaacctgctgttctccgcgaccttctccgacgacatcaaggcgctggccaacaag
ctgctgcataacccggcctcggtggaagtggcgcgccgcaacaccgcgtccgagcagatt
gagcagagcgtgcacttcgtcgacaagaagcgtaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggaaacaggtgctggtgtttacccgcaccaagcacggcgccaaccat
ctggcggaacagctgaacaaagacggcatcactgccgcggcgatccacggtaacaagagc
cagggcgcccgtacccgcgcgctggccgatttcaaagacggccgcatccgcgtgctggtg
gcgactgacatcgcggcgcgcggtctggatatcgaccagctgccgcacgtggtgaactac
gagctgcctaacgtgccggaagactatgtgcaccgtatcggccgtaccggccgcgcggag
cgtaccggtgaggctatctcgctggtgtgcgtggatgagcacaagctgctgcgcgacatc
gagcgtctgctgaagcgtgaaattccgcgcattgcgctgccgggctacgagccggatccg
accatcaaggccgagccgatcatcaacggccgtcagggtggcgggcgcggcgcgccgcgc
ggcaacggcggcggccagcgttccggtaacggcggcggtcagcgcagcggtaacgcgaac
ggcggccagcgtgaaaaccgtggcaacgctaacggtaacgcccgcccgcagggtgatggc
cagcgtcgttccggcgcgccgtcttcgcgccgcccgcgcaaccgcaaaccggccgaataa
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