Serratia marcescens WW4: SMWW4_v1c26250
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Entry
SMWW4_v1c26250 CDS
T02448
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
smw
Serratia marcescens WW4
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smw03016
]
SMWW4_v1c26250 (rnb)
Enzymes [BR:
smw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SMWW4_v1c26250 (rnb)
Transfer RNA biogenesis [BR:
smw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SMWW4_v1c26250 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AGE18422
LinkDB
All DBs
Position
2849005..2850939
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKEAIPCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTQFITDGEDHFAPWWVTLARHNLEKEAPEMQAL
SEPNAALVREDLTALEFVTIDSASTEDMDDALYVTDNADGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIAADGALGDDIQF
FAAEIESKAKLVYDEVSDWLDGIAGWQPPSDAIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGDVLEIVTEQRRSANRIVEECMIAANVCAAIVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEAEAEKLLTLEGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIINQQSAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVQIKGEVVYRQSDTLQVTIAEVRMETRSVIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtcgtgaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagctacttcattccaccgccgtacatgaagaaagtcatgcacggggatcgcatt
atcgccaccctgcacaccgagaaagagcgcgaaatcgccgagccggaaaccctggtcgag
ccgttcctgtcgcgctttgtcggccgcgtgcaaaagcgcgacgatcgtctgtccatcgtg
cccgatcatccgttgctgaaagaggcgattccgtgccgcccggtgcgtgaactgacccac
aacttccaggccggcgactgggcggtggcggaaatgcgtcgtcacccgctgaaaggcgat
cgcggcttcaacgccgacctgacccagtttatcaccgacggtgaagaccatttcgccccg
tggtgggtgacgctggcgcgtcacaacctggaaaaagaggcgccggagatgcaggcgctc
agcgagccgaacgcggcgctggtgcgtgaagatctgaccgcgctcgaattcgtcaccatc
gacagcgccagcaccgaggacatggatgatgcgctgtacgtgaccgacaacgctgacggt
tcgctgcagttgaccatcgccatcgccgatccgaccgcctacgtcgaacaaggcagcaaa
ctggacgatattgcccgcgtgcgcgccttcaccaactatctgccgggcttcaacatcccg
atgctgccgcgcgatctgtcggacaacctgtgctcactgcgccctaatgagcgccgccag
gtgctggcttgccgcgtgaccatcgccgccgacggcgcgctgggtgacgatattcagttc
ttcgccgccgagatcgaatccaaagccaaactggtgtacgacgaagtctccgactggctg
gacggcattgccggctggcaaccgccgagcgacgccatcgcgcaacagatcaccctgctg
aaacgcgtttgcgacgcgcgcaacgcctggcgccaccagcatgcgctggtattcaaagat
cgcccggactaccgcttcgtgttgggtgaaaaaggcgacgtgctggagatcgtcaccgag
cagcgccgcagcgccaaccgtatcgttgaagagtgcatgatcgccgccaacgtctgcgcc
gccatcgtgctgcgcgatcgtttgggcttcggcgtgtacaacgtgcacaccggtttcgat
cccgcgctggttgagcaagcggtcaccgtattgcaggctaacggcgtggaagccgaagcc
gaaaaactgctgacccttgagggcttctgcgaactgcgccgccatctggatgcgcagccg
acccagttcctcgacagccgcatccgccgcttccagaccttcgccgagatcagcactacg
ccggggccacacttcggtctggggctggaggcttacgccacctggacatcgccgatccgt
aaatacggcgatatggtcaaccatcgcctgctgaaggcgatcatcaaccagcaatcggcc
gaaaaaccgcaggatgacgtgacggtgcagctggcggaacgccgccgcctgaaccgcatg
gcggaacgcgacgtcggcgactggctgtacgcccgcttcctgcaggacaaggccggtacc
gatacccgcttcaacgccgagattatcgacgtgacacgcggcggcctgcgcgtgcgcctg
ctggacaacggcgcggttgccttcatcccggcgccgttcattcacgcggtgcgtgacgag
atgcagtgcagccaggaaaccggcaccgtgcagatcaaaggcgaagtggtttaccgccag
agcgataccttgcaggtcaccatcgccgaagtgcgcatggaaacccgcagcgtgatcgcc
cgccctgtggcctga
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