Serratia marcescens WW4: SMWW4_v1c39350
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Entry
SMWW4_v1c39350 CDS
T02448
Symbol
recB
Name
(GenBank) exonuclease V (RecBCD complex), beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
smw
Serratia marcescens WW4
Pathway
smw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SMWW4_v1c39350 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smw03400
]
SMWW4_v1c39350 (recB)
Enzymes [BR:
smw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SMWW4_v1c39350 (recB)
DNA repair and recombination proteins [BR:
smw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SMWW4_v1c39350 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGE19722
LinkDB
All DBs
Position
complement(4253979..4257539)
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AA seq
1186 aa
AA seq
DB search
MTEVAPQRLEPLTLPLFGERLIEASAGTGKTFTIGALYLRLLLGLGGEAAFPRPLTVEEI
LVVTFTEAATEELRGRIRDNIHGLRIACVRGKDAECKNLLFSALMEEIDDLSDAAAQLLA
AERQMDEAAIYTIHGFCQRMLTHNAFESGMLFEQTLVQDELPLRRQACADFWRRHCYPLP
LGVARAVSQEWSGPEALLADLSGYLHGEAPALRRPPKDEETLLMRHEQIVARIDAIKAQW
RAAAGDLEALIAQSGVDKRSYSSKHLPNWLNKVGEWSGQETQDYQLPKELDKFRQSVLLE
KTKKGEPPRHALFTAIDELFDEPLTLRDLIMARALSEIRTSIQQEKRQRAELGFDDLLSR
LDGALQSGGGEQLAQAIRQRYPVAMIDEFQDTDPQQYRIFQKLYVGRPDCGLLLIGDPKQ
AIYAFRGADIFTYMRARSEVSAHYTLETNWRSSPSMVASVNHLFSQVEKPFLFGQIPFIE
VNAAEKNQGLAFELHGTPQPAMQFWLQQGEGVGVSDYQQLMARLCATQIRDWLSAGQQGL
ARLQSGKASRPVQASDITVLVRSRNEAALVRDALSALSIPSVYLSNRDSVFDTPEAKDLL
WLLQAVLAPGQERTLRSAMATGLMGLDAPTLDGLSRDERAWDALVNEFDNYRTLWLRRGV
LPMLSEVMKARQLAENLLASAGGERRLTDVLHLGELLQEAAAQLDSEHALVRWLAQQIAQ
PNRQSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQALYHDRHSFQAL
LDLDANEESQAWAEEERLAEDLRLLYVALTRSVYHCSIGIAPLFQGTRKKQGDTDLHRSA
LGYLVQGGQPGDAVYLQERLQQLAGGGIALSLVESPDEAPWQPQTALAEALAAKSFTRRI
QDFWRVTSYTGLQQHGASLMQDLLPRLDIDAAGERSEESEPALTPHTFPRGATPGTFLHS
LFETLDFTQPLDEQWLLEQLQQQGFAEHWQPILLAWMQVLLNTPLDGSGVTLAALTPQHK
QAELQFYLPINQLLQAKDLDALVRRYDPLSARCPALDFHQVQGMLKGFIDLVFCWQGKYY
LLDYKSNWLGEDSSAYTRPAMEQAMAEHRYDLQYQLYTLALHRYLRHRLPDYDYRRHFGG
VIYLFLRGVDEAHPGNGIFTCLPEFELVAGMDRLFSGEAAATEDGS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagtcgccccgcagaggctagaaccgctgacgttgccgctgtttggcgaacgc
ctgatcgaggcgtcggcgggcaccggcaaaacttttaccatcggcgcgctgtacctgcgc
ttgctgctggggttggggggggaagcggcgtttccccgcccgttgacggtcgaagagatc
ctggtggtgacctttaccgaggccgccaccgaggagctgcgcgggcgtatccgtgacaat
atccacgggctgcgcatcgcctgcgtgcgcggtaaagacgcggaatgcaaaaatctgctg
ttttcggcgctgatggaagaaattgacgatttgtctgacgccgctgcgcagctgctggcg
gcggagcggcaaatggacgaagcggcgatctacaccattcacggcttttgccaacggatg
ctgacgcacaacgccttcgagtccggcatgttgtttgaacaaacgctggtgcaggacgag
ctgccgctgcggcggcaggcctgtgccgacttttggcgtcgccactgctatccgttgccg
ctgggcgtggcgcgtgcggtcagccaggagtggagcggcccggaagcgttgctggccgat
ctctccggctatctgcacggtgaagcgccggcgctgcgtcggccgccgaaggacgaagaa
accctcctgatgcgccacgagcagatcgtcgcgcgcatcgacgccatcaaggcgcaatgg
cgggcggcggcgggcgatcttgaggcgttaatcgcccagtccggcgtcgataagcgcagc
tacagcagtaaacacctgccgaactggctgaacaaggtcggcgaatggagcgggcaggag
actcaggactaccagctgccgaaggaactggataaatttcgccagtcggtgctgctggag
aagaccaagaagggcgagccgccgcggcatgcgctgttcacggcgatagacgaactgttc
gatgaacccttgacgctgcgcgacctgatcatggcgcgcgcactcagcgagatccgcacc
tccattcagcaggaaaaacgccagcgcgccgagctggggtttgacgacctgctcagccgg
ctggacggcgccctgcaaagcggcggcggcgaacagctggcgcaggcgatccgccagcga
tacccggtggcgatgatcgatgaattccaggataccgatccgcagcaataccgtattttc
caaaaactttacgtcggccggcctgattgcggcctgctgctgatcggcgatcccaagcag
gcgatttacgccttccgcggcgccgacatcttcacctacatgcgtgcgcgttcagaggtg
agcgcccactatacgctggagaccaactggcgctcgtcgccgtcgatggtcgccagcgtc
aatcacctgttttctcaggtagaaaaacctttcctgttcggccaaatcccctttattgag
gttaacgcggcggaaaagaaccaagggctggcgtttgaattgcacggcacgccgcagccg
gcgatgcagttctggctgcagcagggagaaggcgtgggtgtaagtgattaccaacagctg
atggcgcgcctgtgcgccacgcaaattcgcgactggctcagcgccgggcagcaggggctg
gcgcggctgcagagcggcaaggcgtcacggccggtacaagcctctgatatcacggtgctg
gtgcgcagccgcaatgaggcggcgttggtgcgcgatgcgctcagcgcgctgtctattccg
tcggtctacctgtccaaccgcgacagcgtgtttgacaccccggaggccaaagacctgctg
tggttgctgcaggcggtgttggcgccggggcaggagcgtacgctgcgcagcgccatggcc
accgggctgatggggctggacgcgccgacgctggacggcctgagccgcgatgagcgcgcc
tgggacgcgctggttaatgaattcgacaattaccgcacgctctggctgcgccgcggcgtg
ttgccgatgctgagcgaggtgatgaaagcgcgccaactggcggagaacctgctggccagc
gccggcggcgagcgtcgcttgaccgacgtgctgcatctgggggagctgttgcaagaagcg
gcggcgcagctcgacagcgagcatgcgctggtgcgctggctggcgcagcagatcgcccag
cctaatcgccagtccgacaatcagcagctgcggctggagagcgaccggcatctggtgcag
gtgatcacgatccacaagtccaaggggctggagttcgatctggtgtggctgccgttcgtc
ggcaacttccgccagcagcagcaggcgctgtatcacgatcgccacagtttccaggcgttg
ctggacctcgacgccaatgaagagagccaggcctgggcggaggaggagcggttagcggaa
gacctgcgtctgctgtacgtggcgctgacccgctcggtgtaccactgcagcatcggcatc
gcgccgttgttccagggcacgcgcaagaagcagggcgataccgatctgcaccgcagcgca
ttgggctatctggtgcagggcgggcagcccggcgacgccgtgtatctgcaggagcgcctg
cagcaattggcgggtggcggcattgcgctgtcgctggttgaatcgccggacgaggcgcct
tggcagccccagacggcgttggccgaagcgctggcggcgaaaagctttacccggcggatc
caggatttttggcgggtgaccagctataccggtttgcagcagcacggcgcgagcctgatg
caggatctgctgccgcgtctggatatcgacgctgcgggggagcggagtgaggagagtgag
ccagcgctcacaccgcataccttcccgcgcggcgcgacgcccggcaccttcctgcacagc
ctgttcgaaacgttggacttcacccagccgctcgacgaacagtggttgctggaacagctg
caacagcaagggttcgctgaacactggcaaccgatactgctggcgtggatgcaggtgcta
ctcaacacgccgctcgatggcagcggcgtgacgctggcggcgttaacgccgcagcacaag
caggcggagttgcagttctatttgccgattaatcagttgttgcaggcgaaggatctcgat
gctctggtgaggcgttacgatccgctttccgctcgctgcccggcgctggatttccatcag
gtgcagggcatgctgaaaggctttatcgacctggtgttctgttggcagggcaaatactac
ctgctggactacaagtccaactggttaggggaagacagcagcgcctatacccggccggcg
atggagcaggcgatggcggagcatcgttacgatctgcaatatcagctgtatacgctggcg
ctgcaccgttatctgcgtcatcggctgccggattacgattaccggcgccatttcggcggg
gtgatttatctgttcctgcgcggcgtggatgaggcgcacccgggcaacggcattttcacc
tgtcttcccgagtttgagctggtggcggggatggatcgcttgttcagcggcgaggctgct
gcgacggaggatggatcatga
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