Serratia marcescens WW4: SMWW4_v1c40000
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Entry
SMWW4_v1c40000 CDS
T02448
Symbol
recJ
Name
(GenBank) ssDNA exonuclease, 5' --> 3'-specific
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smw
Serratia marcescens WW4
Pathway
smw03410
Base excision repair
smw03430
Mismatch repair
smw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SMWW4_v1c40000 (recJ)
03430 Mismatch repair
SMWW4_v1c40000 (recJ)
03440 Homologous recombination
SMWW4_v1c40000 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smw03400
]
SMWW4_v1c40000 (recJ)
DNA repair and recombination proteins [BR:
smw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SMWW4_v1c40000 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SMWW4_v1c40000 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SMWW4_v1c40000 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
AGE19787
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Position
complement(4330158..4331891)
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AA seq
577 aa
AA seq
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MSIKTQLRRRPAADDTHLPASLPPLLRRLYALRGVQAEQELERSVKGMLPWQQLDGIDDA
VSLLQQALADGRRIMVVGDFDADGATSTALTVLALRSMGGAAVDYLVPNRFEDGYGLSPE
VVEQAAARGAELIVTVDNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLR
GCAFPSKSLAGVGVAFYLMLALRARLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPL
DANNRILVYQGLNRIRAGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDM
SIGVALLLSDDIAQARMLANDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSVPGLHMRDALERLDMLNP
GLMMKFGGHAMAAGLSLEEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELSLT
TAELLREGGPWGQAFPEPTFDGKFRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTT
LWPDSSVREVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgagtatcaaaacgcaactacgccgccgcccggcggcggacgacacgcatctgcccgcc
agtttgccgccgctgctgcgccggctttacgccctgcgcggcgtgcaggctgagcaagag
ttggaacgcagcgtcaagggcatgctgccctggcaacagttggacggtatcgacgacgcc
gtcagcctgctgcaacaggcgctggccgacggccgccgcatcatggtggtgggcgatttc
gacgccgatggcgccaccagcaccgcgctgacggtgttggcgctgcgcagcatgggcggc
gcagccgtcgattatctggtgccaaaccgcttcgaagacggctacggcctgagccctgaa
gtggtggagcaggcggcggcgcgcggcgcagaactcattgtcaccgtcgataacggcatc
tcctcccacgccggcgtcgacgtggcgcacgccaaaggcatgcaggtgctggtgaccgat
caccacctgccgggcgagaccctgccggcggctgaagcgatcgttaaccccaacctgcgc
ggctgtgccttcccgtccaaatcgctggcgggggtaggcgtggcgttctacctgatgctg
gcgctgcgcgcccgcctgcgggacagcggctggttcgagcagcgcgcgctggcgatgccc
aatctggcggaactgctggacttggtggcactcggcaccgtggccgacgtggtgccgctg
gacgccaacaaccgcattctggtgtatcaggggttaaaccgcatccgcgccggcaaatgc
cgcccgggcatccgcgcgctgcttgaggtggccaaccgcgacgcccgccagctggcggcc
aacgatctcggtttcgccctcggcccgcggctcaacgccgccggcaggctggacgacatg
tcgatcggcgtggcgctgttgctgagcgacgacatcgcgcaggcgcgcatgctggccaac
gatctcgatgcgctgaaccagacgcgccgcgagatcgagcagggcatgcaggtggaggcc
ttgcagctgtgcgatcagctggagcgcaccagcaccgagctgccttatgggttggcgatg
tatcacccggaatggcaccagggcgtggtgggcatcctcgcttcgcgcatcaaagagcgt
ttccaccgcccggtgatcgcgttcgcgccggcgggcgacggcatcctgaagggctccggc
cgttcggtgcccggcttgcacatgcgcgacgcgctggagcggctggatatgctgaacccc
gggctgatgatgaagttcggcggccacgcgatggcggccgggctgtcgctggaagaggcc
aaattcgacgagttccgccagcgtttcggcgagctggtgggggaatggctcgatccggcg
atgctggaaggggttatctggtccgacggcgaactggcgatgcaggagctgtcgctgacc
acggcggagctgctgcgcgagggcggcccgtggggccaggcgttcccggaaccgaccttc
gacggcaagttccgcattctgcagcagcggctggtgggcgagaaacacctgaagctgatg
gtggaaccgctcggcggcggcccgctgctcgacggcatcgcgttcaacgtggacaccacg
ctgtggccggacagcagcgtgcgcgaagtggaactggcctacaagctcgacgtcaacgag
tttcgcggcaaccgcaacgtgcaactgctgatccagcatctttggccgcgctga
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