Serratia marcescens WW4: SMWW4_v1c43740
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Entry
SMWW4_v1c43740 CDS
T02448
Symbol
csrD
Name
(GenBank) targeting factor for csrBC sRNA degradation
KO
K18765
RNase E specificity factor CsrD
Organism
smw
Serratia marcescens WW4
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smw03019
]
SMWW4_v1c43740 (csrD)
Messenger RNA biogenesis [BR:
smw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SMWW4_v1c43740 (csrD)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Hrs_helical
RH1
Motif
Other DBs
NCBI-ProteinID:
AGE20161
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All DBs
Position
complement(4727493..4729427)
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AA seq
644 aa
AA seq
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MRFTTKLSALITLLVALAMFLMLMGCSYSFFYVTQDRQERRLDSLVTTLDQAMLSEPPQE
QEKWLPIVMRTLGIVSIRIEAGTSQLLDYKLPTVKKEHWDALNGYRQVSRPLLQHPGSTL
YITYLDPFASDVRTLQSTAAVTLSIVVMVVILLFSLRWLREQADGEDRLERRARRILNGE
RENVMQGDVREWPANVSGALDRLLADLAEAREERSRVDTLIRAFAAQDAKTGLNNRLFFD
NQLTTQLEDEGSHGIVMMVRLPDFETLRETHGSVAVQELMYSLVNLLSTFVMRYPSALLA
RYFHSDFTVLLPHRTLKEADGIASQLVNAIDALPSTALIDREAFLHIGIVAYRSGQTTEQ
VIDYAEQATRHATLQGENGWYVYDSQVPEKGRGSVKWRTLLEQVLARGGPRLYQKPAVTV
EGEVHHREIMSRIYDGTQELLPAEYMPLVQQLGLAESYDRQQVSRIIPLLAQWPEETLAF
PLCVDSILQRSFQRWLRDTLLQCEKSQRRRILIELAEADVCQHIDRLRPVLRLLSGLGCR
LAVSKAGLTVVSTSYIKSLQVEIVKLHPGLVRSIDKRDENQLFVQSLTGACAGTRAQVFA
ASVRTRNEWQTLKERGIHGGQGDFFASPEPIDAGRKKYSRRYRV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccaccaaactctctgcattgatcactctgttggtcgcactggcgatgttt
ttgatgctgatgggatgctcatacagcttcttttacgttacccaggatcgccaggagcgc
cgcttggattcgctggttaccactctcgatcaagccatgctgagcgagccgccgcaggag
caggagaaatggttgcccatcgtcatgcgcacgctcggcatcgtgtcgatccgcatagag
gccgggaccagccaactgctcgactataaattgccgacggtcaaaaaagagcactgggat
gcgctgaacggctatcgtcaggtctcgcgccccctgttgcagcacccgggcagcacgctg
tacatcacctacctcgatcccttcgccagcgacgtgcgtacgctgcaatccaccgccgcc
gtcacgctgtcgatcgtcgtcatggtggtgattttgctgttcagcctgcgctggctgcgt
gaacaggccgacggcgaagatcgtctggaacgccgcgcgcggcgcattctgaacggcgag
cgtgaaaacgtcatgcagggcgacgtgcgtgagtggccggccaacgtcagcggcgcgctc
gaccgcctgctggccgatctggcggaagcgcgggaagagcgcagccgggtcgatacgctg
atccgcgccttcgccgcgcaggacgccaaaaccgggctgaataatcgcctgttcttcgat
aaccaattgaccactcagttggaagatgaaggctcgcacggcatcgtgatgatggtgcgg
ctgcccgatttcgagaccctgcgcgagacgcacggcagcgtggcggtgcaggagctgatg
tattcgctggtcaacctgctgtctaccttcgtgatgcgctacccgtcggcgctgctggcg
cgctacttccacagcgattttaccgtgttgttgccgcatcgaaccctgaaggaggccgac
ggcatcgcttcacagctggtcaacgccatcgatgccttgccttccacggcgctgatcgat
cgcgaggccttcctgcacatcggcatcgtggcgtaccgcagcggtcaaaccaccgagcag
gtgatcgattatgcggagcaggcgacgcgccacgctacgctgcagggcgaaaacgggtgg
tatgtgtacgacagccaggtgccggaaaaggggcgcggcagcgtcaagtggcgcacgctg
ctggaacaggtgctggcgcgcggcggcccgcggctgtatcagaaaccggcggtgaccgtg
gaaggcgaggtgcaccatcgcgagatcatgagccggatctatgacggcacccaggaattg
ctgccggcggaatatatgccgctggtgcagcagctggggttggcggagagttacgatcgc
caacaggtgagccgcatcattcccttgttggcgcagtggcccgaggaaacgctggcgttc
ccgctgtgcgtagactcgattttgcagcgctctttccagcgctggctgcgggatacgctg
ttgcagtgcgaaaaaagtcagcgtcgacgaattctgattgaacttgcggaggcagatgtg
tgtcaacatatcgaccgtttgcgtccggtgctgaggctgttgtcagggctgggctgccgc
ctggcggtgtccaaagcgggtttaaccgtggtcagtacgtcctatatcaagtcgctgcag
gtggagatcgtcaagctccacccggggttggtgcggagcatcgataagcgggacgaaaac
cagctgttcgtgcagagcctgaccggcgcctgcgcgggtacgcgcgcgcaggtgttcgcc
gccagcgtacgtacgcgcaacgaatggcagacgctgaaagagcgtgggatccatggcggg
cagggcgactttttcgcgtcgccggaaccgatcgacgcggggcgtaaaaaatattcacgt
cgttatcgcgtttaa
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