Serratia marcescens WW4: SMWW4_v1c44830
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Entry
SMWW4_v1c44830 CDS
T02448
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
smw
Serratia marcescens WW4
Pathway
smw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMWW4_v1c44830 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smw03021
]
SMWW4_v1c44830 (rpoA)
03400 DNA repair and recombination proteins [BR:
smw03400
]
SMWW4_v1c44830 (rpoA)
Enzymes [BR:
smw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMWW4_v1c44830 (rpoA)
Transcription machinery [BR:
smw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMWW4_v1c44830 (rpoA)
DNA repair and recombination proteins [BR:
smw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMWW4_v1c44830 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AGE20270
LinkDB
All DBs
Position
complement(4858416..4859405)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENAAISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagcctttagagcgtggctttggccatactcttggc
aacgcactgcgccgtattctgctttcatctatgccgggttgcgcggtgaccgaggttgag
attgatggtgtactgcatgagtacagcaccaaagaaggcgtacaggaagatatcctggag
atcctgctcaacctgaaagggctggcggtgagagttcaaggcaaagacgaagttattctt
accctgaataaatctggcattggccctgtgaccgctgccgacatcacccatgatggtgat
gtcgaaatcgtcaagcctcagcacgtgatttgccacctgactgatgagaacgcggctatc
agcatgcgtatcaaagttcagcgcggtcgcggttatgtgccggcttctgcccgaattcat
tcggaagaagatgagcgcccaatcggtcgtctgttggttgacgcctgctacagccctgta
gagcgtatcgcctacaatgttgaagctgcgcgtgtagaacagcgtactgacttggataag
ctggtcatcgaaatggagaccaatggcacgatcgatcctgaagaggcgatccgccgtgcg
gccaccattctggctgaacaacttgaagctttcgttgacctgcgtgatgtgcgtcagccg
gaagttaaagaagagaaaccggaattcgatccgatcttgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgcctcaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgagttgctgaaaacgccaaacctgggtaaaaaatctctt
accgagattaaagacgtgctggcctcacgtggtctgtctctgggcatgcgcctggaaaac
tggccgccggcaagcattgctgacgagtaa
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