Serratia marcescens WW4: SMWW4_v1c47560
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Entry
SMWW4_v1c47560 CDS
T02448
Symbol
rfaD
Name
(GenBank) NAD(P)-binding ADP-L-glycero-D-mannoheptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
smw
Serratia marcescens WW4
Pathway
smw00541
Biosynthesis of various nucleotide sugars
smw01100
Metabolic pathways
smw01250
Biosynthesis of nucleotide sugars
Module
smw_M00064
ADP-L-glycero-D-manno-heptose biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SMWW4_v1c47560 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
smw01005
]
SMWW4_v1c47560 (rfaD)
Enzymes [BR:
smw01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
SMWW4_v1c47560 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
smw01005
]
Core region
SMWW4_v1c47560 (rfaD)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
KR
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AGE20543
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All DBs
Position
5158860..5159789
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AA seq
309 aa
AA seq
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MIIVTGGAGMIGSNIIKALNDKGYRDILVVDNLKDGTKFVNLVDLDIADYIDKEDFIASI
VAGDDLGEIEAVFHEGACSATTEWDGKYMMDNNYQYSKDLLHYCLDREIPFLYASSAATY
GGREEFIEEREYEAPLNVYGYSKFLFDQYVREILPEADSQICGFRYFNVYGPREGHKGSM
ASVAFHLNTQINRGENPKLFAGSENFKRDFIYVGDVAAVNLWFWETGKSGIFNCGTGRAE
TFQAVADAVVDFHQKGAVEYIEFPEKLKGRYQAYTQADLTKLRAAGYDAPFKTVAEGVKE
YMAWLNRTA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtcacaggcggcgccggcatgatcggcagcaacatcattaaggcactgaac
gacaagggatatcgcgatatcctggtggtggataacctgaaagacggcaccaagttcgtc
aacctggtcgatctggatatcgccgactatatcgataaagaagactttatcgccagcatc
gtggccggcgacgatctgggcgagatcgaagcggtgttccacgaaggcgcctgctccgcg
accaccgagtgggacggcaagtacatgatggacaataactatcagtactccaaagacctg
ctgcactactgcctggatcgcgaaatcccgttcttgtatgcctcctccgccgccacttac
ggcggccgcgaagagttcatcgaagagcgtgagtatgaagcgccgctcaacgtttacggc
tactccaaattcctgttcgatcaatacgtgcgcgagatcctgccggaagcggactcgcag
atctgcggcttccgctacttcaacgtttatggcccgcgcgaaggccacaaaggcagcatg
gccagcgtcgccttccacctgaatacccagatcaaccgcggcgaaaacccgaaactgttc
gccggcagcgaaaacttcaagcgtgacttcatctacgtcggcgacgtggcggcggttaac
ctgtggttctgggaaaccggcaaatccggcatcttcaactgcggcaccggccgagcggaa
accttccaggcggtagccgacgcggtggtggacttccaccagaaaggcgctgtggaatac
atcgagttcccggagaagctgaaaggccgctatcaggcgtacacccaggccgatctgacc
aagctgcgcgcggccggctacgacgcaccgttcaaaacggtcgccgaaggcgtgaaagag
tacatggcctggttgaaccgcaccgcataa
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