KEGG   Sinorhizobium meliloti SM11: SM11_chr2118
Entry
SM11_chr2118      CDS       T01885                                 
Symbol
lpdA1
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
smx  Sinorhizobium meliloti SM11
Pathway
smx00010  Glycolysis / Gluconeogenesis
smx00020  Citrate cycle (TCA cycle)
smx00260  Glycine, serine and threonine metabolism
smx00280  Valine, leucine and isoleucine degradation
smx00310  Lysine degradation
smx00380  Tryptophan metabolism
smx00620  Pyruvate metabolism
smx00630  Glyoxylate and dicarboxylate metabolism
smx00640  Propanoate metabolism
smx00670  One carbon pool by folate
smx00785  Lipoic acid metabolism
smx01100  Metabolic pathways
smx01110  Biosynthesis of secondary metabolites
smx01120  Microbial metabolism in diverse environments
smx01200  Carbon metabolism
smx01210  2-Oxocarboxylic acid metabolism
smx01240  Biosynthesis of cofactors
Module
smx_M00009  Citrate cycle (TCA cycle, Krebs cycle)
smx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
smx_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
smx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
smx_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:smx00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SM11_chr2118 (lpdA1)
   00020 Citrate cycle (TCA cycle)
    SM11_chr2118 (lpdA1)
   00620 Pyruvate metabolism
    SM11_chr2118 (lpdA1)
   00630 Glyoxylate and dicarboxylate metabolism
    SM11_chr2118 (lpdA1)
   00640 Propanoate metabolism
    SM11_chr2118 (lpdA1)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    SM11_chr2118 (lpdA1)
   00280 Valine, leucine and isoleucine degradation
    SM11_chr2118 (lpdA1)
   00310 Lysine degradation
    SM11_chr2118 (lpdA1)
   00380 Tryptophan metabolism
    SM11_chr2118 (lpdA1)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SM11_chr2118 (lpdA1)
   00670 One carbon pool by folate
    SM11_chr2118 (lpdA1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:smx04147]
    SM11_chr2118 (lpdA1)
Enzymes [BR:smx01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     SM11_chr2118 (lpdA1)
Exosome [BR:smx04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   SM11_chr2118 (lpdA1)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_binding_2 FAD_binding_3 FAD_oxidored NAD_binding_8 HI0933_like DAO GIDA Amino_oxidase 2-Hacid_dh_C Thi4 Lys_Orn_oxgnase 3HCDH_N CDCA
Other DBs
NCBI-ProteinID: AEH79380
UniProt: F7X1K4
LinkDB
Position
complement(2106371..2107816)
AA seq 481 aa
MAENYDVIVVGSGPGGYVTAIRSAQLGLKTAIVEREHLGGICLNWGCIPTKALLRSAEIL
DHANHAKNYGLTLEGKITANVKDVVARSRGVSARLNGGVAFLMKKNKVDVIWGEAKLTKP
GEIVVGAPSKPAVQPQNPVPKGVKGEGTYTAKHIIVATGARPRALPGIEPDGKLIWTYFE
AMKPEEFPKSLLVMGSGAIGIEFASFYRSMGVDVTVVELLPQIMPVEDAEISAFARKQLE
KRGLKIITDAKVTKVEKGANDVTAHVETKDGKVTPIKADRLISAVGVQGNIENLGLEALG
VKTDRGCIVTDGYGKTNVAGIYAIGDVAGPPMLAHKAEHEGVICVEKIAGVPGVHALDKG
KIPGCTYCDPQVASVGLTEAKAKELGRDIRVGRYSFGANGKAIALGEDQGLIKTIFDKKT
GELIGAHMVGAEVTELIQGFVVAMNLETTEEELMHTVFPHPTLSEMMKESVLDAYGRVLN
A
NT seq 1446 nt   +upstreamnt  +downstreamnt
atggctgagaattacgacgttatcgttgtcggttcgggtccgggcggatacgtgaccgcc
attcgttcggcgcagctgggcttgaagacggcgatcgtcgagcgggagcatctgggcggg
atctgcctcaactggggctgcattccgaccaaggcgcttttgcgctccgccgaaattctc
gaccatgccaaccatgccaagaactacggcctgaccctcgaaggcaagatcaccgccaac
gtcaaggatgtcgttgcccgctcgcgcggtgtctccgcgcggctgaacggcggcgtcgcc
ttcctgatgaagaagaacaaggtggacgtgatctggggcgaggcgaagctcaccaaaccc
ggcgagatcgtcgtcggcgcgccgtccaagccagccgtccagccgcagaacccggttccg
aagggcgtcaagggagaggggacctatacggccaagcacatcatcgtcgcaaccggcgcg
cgcccgcgcgcgctccccggcatcgagccggacggcaagctgatctggacctatttcgag
gcgatgaagccggaggaattcccgaagtcgctgctcgtcatgggctccggcgcgatcggc
atcgaattcgcgagcttctaccgctcgatgggcgtcgacgtgaccgtcgtcgaactgctg
ccgcagatcatgccggtcgaggatgcggaaatttccgctttcgcccgtaagcagctcgaa
aagcgcggcctgaagatcatcaccgatgccaaggtgacgaaggtcgagaagggcgcgaac
gacgtcacggcgcatgttgagacgaaggacggcaaggtcacgccgatcaaggcggaccgt
ctgatctccgccgtcggcgttcagggcaacatcgagaatctcggcctcgaggccctcggc
gtgaagaccgaccgcggctgcatcgtcaccgatggctacggcaagaccaatgtcgcgggc
atctatgcgatcggcgacgtcgccgggccgccgatgctggcgcacaaggccgagcatgag
ggcgtcatctgcgtcgagaagattgccggggttcccggcgtgcacgcgcttgacaagggc
aagatcccgggctgcacctattgcgacccgcaggtcgcctccgtgggcctcacggaagcg
aaggccaaggaactcggccgcgacatccgcgtcggccgatacagcttcggcgcaaacggc
aaggcgatcgcgctcggcgaagaccagggcctgatcaagaccatcttcgacaagaagacc
ggcgaactgatcggcgcgcacatggtaggggccgaagtgaccgaactcatccagggcttc
gtcgtcgccatgaacctggagacgaccgaagaggaactgatgcacacggtgttcccgcac
ccgaccctttcggagatgatgaaggaaagcgtgctcgatgcctacggcagagtattgaac
gcctga

KEGG   Sinorhizobium meliloti SM11: SM11_chr2121
Entry
SM11_chr2121      CDS       T01885                                 
Symbol
pdhC
Name
(GenBank) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
  KO
K00627  pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
Organism
smx  Sinorhizobium meliloti SM11
Pathway
smx00010  Glycolysis / Gluconeogenesis
smx00020  Citrate cycle (TCA cycle)
smx00620  Pyruvate metabolism
smx00785  Lipoic acid metabolism
smx01100  Metabolic pathways
smx01110  Biosynthesis of secondary metabolites
smx01120  Microbial metabolism in diverse environments
smx01200  Carbon metabolism
smx01210  2-Oxocarboxylic acid metabolism
Module
smx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:smx00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SM11_chr2121 (pdhC)
   00020 Citrate cycle (TCA cycle)
    SM11_chr2121 (pdhC)
   00620 Pyruvate metabolism
    SM11_chr2121 (pdhC)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SM11_chr2121 (pdhC)
Enzymes [BR:smx01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.1  Transferring groups other than aminoacyl groups
    2.3.1.12  dihydrolipoyllysine-residue acetyltransferase
     SM11_chr2121 (pdhC)
SSDB
Motif
Pfam: 2-oxoacid_dh Biotin_lipoyl E3_binding Biotin_lipoyl_2 RnfC_N QRPTase_N Peptidase_M23 DUF2118 HlyD_2 ATP-synt_ab_Xtn Gp77
Other DBs
NCBI-ProteinID: AEH79383
UniProt: F7X1K7
LinkDB
Position
complement(2109116..2110459)
AA seq 447 aa
MPINITMPALSPTMEEGNLAKWLVKEGDKVKSGDVIAEIETDKATMEVEAVDEGTVAKIV
VPAGTEGVKVNALIAVLAAEGEDVATAAKGGNGAAGAVPAPKPKETAETAPAAAPAPAAA
PAPQAAAPASPAPADGEGKRIFSSPLARRLAKEAGIDLSAIAGSGPHGRVVKKDVETAVS
GGAAKPAAAQAAAPAPATLAKGMSEDAVLKLFEPGSYELVPHDGMRKTIAKRLVESKQTI
PHFYVSVDCELDALMALRAQLNAAAPEKDGKPVYKLSVNDMVIKALALALRDVPDANVSW
TDQNMVKHKHADVGVAVSIPGGLITPIVRQAELKSLSAISNEMKDLGKRAKERKLKPEEY
QGGTTAVSNMGMMGVKDFAAVVNPPHATILAVGAGEDRVVVRNKEMVIANVMTVTLSTDH
RCVDGALGAELLAAFKRYIENPMGMLV
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgccaatcaacatcaccatgccggccctctccccgaccatggaagaaggcaatctggcc
aagtggctggtcaaggaaggcgacaaggtcaagtccggcgatgtgatcgccgagatcgag
accgacaaggcgacgatggaagtggaagccgtcgatgagggcacggtcgccaagatcgtc
gttcccgccggcactgaaggcgtcaaggtcaatgcgctgatcgcggttctcgccgccgag
ggcgaagacgtcgcgactgccgccaagggcggcaacggtgcagcgggagcagtcccggca
ccgaagccgaaggaaacggccgaaacggcaccggccgcggctccggcacccgccgcagcg
ccggcaccgcaagctgctgctccggcttctcctgcgcccgccgatggcgaaggcaagcgc
atcttttcgtcgccgctggcacgccgcctcgcgaaggaggcaggcatcgacctttcggcg
atcgccggttccggaccgcatggccgcgtcgtcaagaaggacgtcgagacagccgtttcc
ggtggcgccgccaagcccgccgccgcgcaggcagcagctccggccccggcgacgctcgct
aagggcatgtcggaggacgccgtcctcaagctcttcgagccaggctcctacgaactcgtg
ccgcatgacggcatgcgcaagacgatcgccaagcgcctcgtcgaatcgaagcagacgatc
ccgcatttctatgtttcggtcgattgcgagctcgacgcgcttatggcgctgcgcgcccag
ctgaatgccgcagcacctgaaaaggatggtaagccggtctacaagctttccgtgaacgac
atggtgatcaaggcgcttgctctggcgctgcgcgacgtaccggatgcgaatgtgtcctgg
accgatcagaacatggtcaagcacaagcacgcggacgtcggcgttgccgtctccatcccc
ggcggcctgatcacgcccatcgtccgccaggcggagttgaagagcctctcggcgatctcc
aacgagatgaaggatctcggcaagcgcgcgaaggagcgcaagctgaagccggaagaatat
cagggcggcaccacggccgtctccaatatgggcatgatgggcgtcaaggacttcgccgcc
gtcgtcaatccgccgcacgcgacgatcctcgcggtcggcgccggcgaggaccgtgtcgtc
gtcaggaacaaggaaatggtcatcgccaatgtgatgaccgtcacgctttcgaccgaccat
cgctgcgtcgatggcgcgctcggcgccgaactgctcgccgccttcaagcgctacatcgaa
aacccgatgggtatgctcgtctga

KEGG   Sinorhizobium meliloti SM11: SM11_chr2122
Entry
SM11_chr2122      CDS       T01885                                 
Symbol
pdhAb
Name
(GenBank) PdhA, beta subunit
  KO
K00162  pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Organism
smx  Sinorhizobium meliloti SM11
Pathway
smx00010  Glycolysis / Gluconeogenesis
smx00020  Citrate cycle (TCA cycle)
smx00620  Pyruvate metabolism
smx00785  Lipoic acid metabolism
smx01100  Metabolic pathways
smx01110  Biosynthesis of secondary metabolites
smx01120  Microbial metabolism in diverse environments
smx01200  Carbon metabolism
smx01210  2-Oxocarboxylic acid metabolism
Module
smx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:smx00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SM11_chr2122 (pdhAb)
   00020 Citrate cycle (TCA cycle)
    SM11_chr2122 (pdhAb)
   00620 Pyruvate metabolism
    SM11_chr2122 (pdhAb)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SM11_chr2122 (pdhAb)
Enzymes [BR:smx01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.4  With a disulfide as acceptor
    1.2.4.1  pyruvate dehydrogenase (acetyl-transferring)
     SM11_chr2122 (pdhAb)
SSDB
Motif
Pfam: Transket_pyr Transketolase_C Biotin_lipoyl Biotin_lipoyl_2 PFOR_II Transketolase_C_1 GCV_H Gp77 QRPTase_N HlyD_2
Other DBs
NCBI-ProteinID: AEH79384
UniProt: F7X1K8
LinkDB
Position
complement(2110472..2111854)
AA seq 460 aa
MPVEILMPALSPTMEEGTLSKWLKNEGDKVSSGDVIAEIETDKATMEVEAVDEGTIGKLL
IAAGTEGVKVNTPIAVLLQDGEAASDIDSMKTEAPKAETPKPAAAEAPAASAAPVAAQPK
ADVPSDPAIPAGTEMATMTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQ
EFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSG
GQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPN
PVIFLENEILYGQSFEVPKLDDFVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEA
QGIDVEIIDLRTIRPMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLD
APILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVCYK
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgcctgtagaaatccttatgcctgccctttccccgaccatggaggaaggcacgctctcc
aagtggctgaagaacgagggggacaaggtgtcctccggcgatgtcatcgcggaaatcgaa
accgacaaggccacgatggaagtggaagcggtagacgaaggcacgatcggcaagctgctg
atcgcagccggcaccgagggtgtgaaggtgaacacgccgatcgccgtcctgttgcaggat
ggcgaagccgcaagcgacatcgattccatgaaaaccgaagccccgaaagcggaaacgcct
aagccggccgcggctgaagcgccggctgcttccgcggcgcccgtcgcggcgcagcccaag
gcggacgttccttccgacccggcaattccggccggaaccgaaatggcgacgatgaccgtc
cgcgaagcgcttcgcgacgcgatggccgaagagatgcgcgccaatgaggacgtcttcgtc
atgggcgaagaggtcgccgaataccagggcgcctacaaggtcacgcagggcctgttgcag
gaattcggtgcgcgccgcgtggtcgacacgccgatcacggaacatggctttgccggcgtc
ggcgtcggcgcggcgatgacgggtctgcgcccgatcgtcgagttcatgacgttcaacttc
gccatgcaggcgatcgaccagatcatcaactcggccgctaagacgctctatatgtccggc
ggccagatgggcgcgccgatcgtcttccgcggtccgagcggtgctgcagcccgcgtcgcc
gcgcagcactcccagtgctatgccgcctggtacagccacattccgggcctgaaggtcgtt
atgccctatacggcggcggacgcgaaggggctgctcaaggccgccatccgcgatccgaac
ccggtgatcttcctcgaaaacgagatcctttacggccagtccttcgaagtgccgaagctc
gacgatttcgtgctgccgatcggcaaggcacgcatccatcgtaccggcaaggacgcgacg
ctcgtctccttcggcatcggcatgacctatgcgatcaaggccgcggcggaactcgaggcg
cagggtatcgacgtcgagatcatcgaccttcgcacgatccggccgatggacctgccgacc
gtcatcgagtccgtcaagaagaccggccgcctcgtcaccgtcgaggaaggatatcctcag
tcctccgtcggcaccgagatcgccacccgcgtcatgcagcaggccttcgactatctcgat
gcgccgatcctgacgatcgccggcaaggacgtgccgatgccttacgcggccaaccttgaa
aagcttgctctgccgaatgtcgcggaagtcgtcgatgcggtgaaagccgtctgctacaaa
taa

KEGG   Sinorhizobium meliloti SM11: SM11_chr2123
Entry
SM11_chr2123      CDS       T01885                                 
Symbol
pdhAa
Name
(GenBank) PdhA, alpha subunit
  KO
K00161  pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Organism
smx  Sinorhizobium meliloti SM11
Pathway
smx00010  Glycolysis / Gluconeogenesis
smx00020  Citrate cycle (TCA cycle)
smx00620  Pyruvate metabolism
smx00785  Lipoic acid metabolism
smx01100  Metabolic pathways
smx01110  Biosynthesis of secondary metabolites
smx01120  Microbial metabolism in diverse environments
smx01200  Carbon metabolism
smx01210  2-Oxocarboxylic acid metabolism
Module
smx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:smx00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SM11_chr2123 (pdhAa)
   00020 Citrate cycle (TCA cycle)
    SM11_chr2123 (pdhAa)
   00620 Pyruvate metabolism
    SM11_chr2123 (pdhAa)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SM11_chr2123 (pdhAa)
Enzymes [BR:smx01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.4  With a disulfide as acceptor
    1.2.4.1  pyruvate dehydrogenase (acetyl-transferring)
     SM11_chr2123 (pdhAa)
SSDB
Motif
Pfam: E1_dh DXP_synthase_N TPP_enzyme_C Transketolase_N
Other DBs
NCBI-ProteinID: AEH79385
UniProt: F7X1K9
LinkDB
Position
complement(2111872..2112918)
AA seq 348 aa
MAPRKSASVSSRKTAAKPAKKDFAGGTIAEFSKEDDLKAYREMLLIRRFEEKAGQLYGMG
FIGGFCHLYIGQEAVVVGMQLALKEGDQVITGYRDHGHMLACGMSARGVMAELTGRRGGL
SKGKGGSMHMFSKEKHFYGGHGIVGAQVSLGTGLAFANRYRGNDNVSLAYFGDGAANQGQ
VYESFNMAALWKLPVIYIVENNRYAMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRA
VKAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDPAKYRSKDEVQKMRSEHDPIEQVKA
RLTDKGWATEDELKQIDKEVRDIVADSADFAQSDPEPDVSELYTDILL
NT seq 1047 nt   +upstreamnt  +downstreamnt
atggctccgcgaaaatccgcgtccgtttccagccgcaagaccgctgccaagccggccaag
aaagattttgccggcggcacgatcgccgaattctccaaggaagacgatctcaaggcctac
cgggaaatgctgttgatccggcgtttcgaggaaaaggccggccagctctacggcatggga
ttcatcggtggtttctgtcacctctatatcggtcaggaagccgtcgtcgtcgggatgcag
ctggcgctgaaagagggcgaccaggtcatcaccggctatcgcgaccatggccatatgctc
gcctgcggcatgagtgcgcgcggcgtgatggcggagctcaccgggcgccgtggcggtctt
tccaaggggaagggcggctctatgcacatgttctccaaggaaaagcatttctatggcggg
cacggcatcgtcggtgcacaggtctcgctcgggaccggcctcgctttcgccaacagatac
cgcggcaacgacaatgtaagcctcgcctatttcggcgacggtgccgccaaccagggtcag
gtctatgagagcttcaacatggccgctctctggaaactgccggtgatctacatcgtcgag
aacaaccgttatgccatgggtacctccgtgtcgcgggcatcggcgcagaccgatttctcc
cagcgcggcgcttccttcggcattcccggctatcaggtcgacggcatggatgtccgcgcc
gtcaaggccgcagccgacgaggcggtcgaacattgccgttccggcaagggcccgatcatc
ctcgaaatgctgacctaccgctatcgcggccattccatgtccgatccggcgaagtatcgc
tcgaaggatgaagtgcagaagatgcgttcggagcatgatccgatcgagcaggtgaaggcc
cgcctgacggataaaggctgggccaccgaggacgaactgaagcagatcgacaaggaggtt
cgcgacatcgttgcggacagtgccgatttcgcccagtctgatccggagccggatgtctcc
gagctctataccgatatcctgctttga

KEGG   Sinorhizobium meliloti SM11: SM11_chr3107
Entry
SM11_chr3107      CDS       T01885                                 
Symbol
lpdA3
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
smx  Sinorhizobium meliloti SM11
Pathway
smx00010  Glycolysis / Gluconeogenesis
smx00020  Citrate cycle (TCA cycle)
smx00260  Glycine, serine and threonine metabolism
smx00280  Valine, leucine and isoleucine degradation
smx00310  Lysine degradation
smx00380  Tryptophan metabolism
smx00620  Pyruvate metabolism
smx00630  Glyoxylate and dicarboxylate metabolism
smx00640  Propanoate metabolism
smx00670  One carbon pool by folate
smx00785  Lipoic acid metabolism
smx01100  Metabolic pathways
smx01110  Biosynthesis of secondary metabolites
smx01120  Microbial metabolism in diverse environments
smx01200  Carbon metabolism
smx01210  2-Oxocarboxylic acid metabolism
smx01240  Biosynthesis of cofactors
Module
smx_M00009  Citrate cycle (TCA cycle, Krebs cycle)
smx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
smx_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
smx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
smx_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:smx00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SM11_chr3107 (lpdA3)
   00020 Citrate cycle (TCA cycle)
    SM11_chr3107 (lpdA3)
   00620 Pyruvate metabolism
    SM11_chr3107 (lpdA3)
   00630 Glyoxylate and dicarboxylate metabolism
    SM11_chr3107 (lpdA3)
   00640 Propanoate metabolism
    SM11_chr3107 (lpdA3)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    SM11_chr3107 (lpdA3)
   00280 Valine, leucine and isoleucine degradation
    SM11_chr3107 (lpdA3)
   00310 Lysine degradation
    SM11_chr3107 (lpdA3)
   00380 Tryptophan metabolism
    SM11_chr3107 (lpdA3)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SM11_chr3107 (lpdA3)
   00670 One carbon pool by folate
    SM11_chr3107 (lpdA3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:smx04147]
    SM11_chr3107 (lpdA3)
Enzymes [BR:smx01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     SM11_chr3107 (lpdA3)
Exosome [BR:smx04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   SM11_chr3107 (lpdA3)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_binding_2 GIDA HI0933_like FAD_binding_3 FAD_oxidored UDPG_MGDP_dh_N AlaDh_PNT_C NAD_binding_8 DAO 3HCDH_N DciA Lys_Orn_oxgnase
Other DBs
NCBI-ProteinID: AEH80351
UniProt: F7X9Q2
LinkDB
Position
3101639..3103033
AA seq 464 aa
MKEISCKLLVLGAGPGGYVAAIRAGQLGVNTVIVEKAKAGGTCLNVGCIPSKALIHAADE
YHRLRAAASGKGPLGLSLSAPAIDLRRTIAWKDGIVGRLNGGVTGLLKKAGVKAVIGEGR
FVDGKTVDVETETGLQRIRAEAIVIATGSAPVELPDLPFGGSVISSTQALALTDVPQTLA
VIGGGYIGLELGTAFAKLGSKVTVLEALDRILPQYDADLSKPVMKRLGELGVEVFTRTAA
KRLSADRRGLLAEENGRAFEVPAEKVLVTVGRRPVTDGWGLEEIDLDHSGRFIRIDDQCR
TSMRGVYAIGDVTGEPMLAHRAMAQGEMVAEIVAGHKRSWDKRCIPAVCFTDPEIVGAGL
SPEEARAAGIDVKIGQFPFQANGRAMTTLSEDGFVRVIARADNHLVLGIQAVGHGVSELS
ATFALAIEMGARLEDIAGTIHAHPTQSEAFQEAALKTLGHALHI
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgaaggaaatctcctgcaagctcctggttctcggcgccggacccggcggctatgtcgcg
gcgatccgcgccggccagctcggcgtcaacacggtgatcgtcgagaaagcgaaggcgggc
ggcacctgcctgaatgtcggctgcattccgtcgaaggcgctgatccatgcggcggacgaa
tatcacaggctgcgcgcggctgcctcgggcaagggcccgctcggcctttccttgagtgct
ccggcgatcgacctcaggcgaacgatcgcctggaaggacggcatcgtcggacggctgaac
ggtggggtcacggggctcctgaagaaggcgggcgtcaaggcggtcatcggcgaagggcga
ttcgtagacggcaagacggtggatgtagaaacggaaaccgggcttcagcgcattcgggcg
gaagcaatcgtaatcgcgaccggttcggcgccggtcgagcttcccgacctccccttcggc
ggaagcgtcatttcctcgacccaagcgctggcgctgacggacgtgccgcagacgctcgcg
gtcatcggcggcggctatatcggtctcgaactcggaaccgcctttgccaagcttggctcc
aaagtcaccgtgctcgaagcgctggaccggatcctgccgcaatacgacgccgatctctcg
aagccggtgatgaagcggctcggcgaactcggtgtggaggtcttcacccgcaccgcggcc
aaacggctctccgccgatcggcggggcttgcttgccgaggagaacggccgcgccttcgag
gtcccggcggagaaggtcctcgtcaccgtcggccgccggcccgtgacggatggctggggg
ttggaggaaatcgacctcgaccactcaggccgcttcatccgcatcgacgaccaatgccgc
acctcgatgcgcggcgtctatgcgatcggcgacgtgaccggcgagccgatgcttgcgcac
cgggcgatggcacaaggcgaaatggtcgcggaaatcgtcgccgggcataagcggagctgg
gacaagcgctgcattccggcggtctgcttcaccgacccggaaatcgtcggcgccggcctc
tcgccggaagaggcgcgcgccgccggcatcgacgtcaagatcggccaatttcccttccag
gcaaacggccgcgccatgacgacgctctccgaggacggcttcgtgcgggtcatcgcccgc
gccgacaatcacctggttctcggcatccaggctgtcggccatggcgtttcggaactttcg
gcgacttttgcgctggcgatcgagatgggcgcgcggctggaggacatcgccggcaccata
catgcgcatccgacccaatcggaagccttccaggaggcagccctcaagacgttggggcac
gctctgcatatttga

KEGG   Sinorhizobium meliloti SM11: SM11_chr3227
Entry
SM11_chr3227      CDS       T01885                                 
Symbol
lpdA2
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
smx  Sinorhizobium meliloti SM11
Pathway
smx00010  Glycolysis / Gluconeogenesis
smx00020  Citrate cycle (TCA cycle)
smx00260  Glycine, serine and threonine metabolism
smx00280  Valine, leucine and isoleucine degradation
smx00310  Lysine degradation
smx00380  Tryptophan metabolism
smx00620  Pyruvate metabolism
smx00630  Glyoxylate and dicarboxylate metabolism
smx00640  Propanoate metabolism
smx00670  One carbon pool by folate
smx00785  Lipoic acid metabolism
smx01100  Metabolic pathways
smx01110  Biosynthesis of secondary metabolites
smx01120  Microbial metabolism in diverse environments
smx01200  Carbon metabolism
smx01210  2-Oxocarboxylic acid metabolism
smx01240  Biosynthesis of cofactors
Module
smx_M00009  Citrate cycle (TCA cycle, Krebs cycle)
smx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
smx_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
smx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
smx_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:smx00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SM11_chr3227 (lpdA2)
   00020 Citrate cycle (TCA cycle)
    SM11_chr3227 (lpdA2)
   00620 Pyruvate metabolism
    SM11_chr3227 (lpdA2)
   00630 Glyoxylate and dicarboxylate metabolism
    SM11_chr3227 (lpdA2)
   00640 Propanoate metabolism
    SM11_chr3227 (lpdA2)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    SM11_chr3227 (lpdA2)
   00280 Valine, leucine and isoleucine degradation
    SM11_chr3227 (lpdA2)
   00310 Lysine degradation
    SM11_chr3227 (lpdA2)
   00380 Tryptophan metabolism
    SM11_chr3227 (lpdA2)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SM11_chr3227 (lpdA2)
   00670 One carbon pool by folate
    SM11_chr3227 (lpdA2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:smx04147]
    SM11_chr3227 (lpdA2)
Enzymes [BR:smx01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     SM11_chr3227 (lpdA2)
Exosome [BR:smx04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   SM11_chr3227 (lpdA2)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored FAD_binding_2 NAD_binding_8 DAO GIDA HI0933_like Lys_Orn_oxgnase FAD_binding_3 AlaDh_PNT_C Amino_oxidase 3HCDH_N
Other DBs
NCBI-ProteinID: AEH80464
UniProt: F7X0C8
LinkDB
Position
complement(3241528..3242934)
AA seq 468 aa
MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFH
QAQHGLEALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQG
KVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKTIVSSTGALALEKVPASMIV
VGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVT
GVVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEID
RHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVA
SVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGA
GEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALSTFFKPIHM
NT seq 1407 nt   +upstreamnt  +downstreamnt
atggcctatgatctcatcgttatcggaagcggccccggcggctatgtctgcgccatcaag
gcggcgcagctcggcatgaaggttgccgtggtcgagaagcgcagcacctatggcggcaca
tgcctgaatgtcggctgcatcccctccaaggcgctgctgcatgcttccgaaatgttccat
caggctcagcacggcctggaggcgctgggtgtggaggtcgcaaacccgaagctcaacctt
cagaagatgatggcccacaaggacgcaaccgttaagtccaacgtcgacggcgtctccttc
ctcttcaagaagaacaagatcgatggcttccagggcaccggcaaggttctcggccagggc
aaggtctcggtcacgaacgaaaagggtgaggagcaggtgctcgaggcgaagaacgtcgtc
atcgccaccggctcggatgtcgccggcatcccgggcgtggaggtcgcgttcgacgaaaag
accatcgtctcctcgaccggggcgctcgcgctcgaaaaggtccccgcgagcatgatcgtc
gtcggcggcggcgtcatcggcctcgagctcggctcggtctgggcgcgcctcggcgccaag
gtgaccgtggtcgaattcctcgacacgattctcggcggcatggacggcgaagtcgccaag
cagcttcagcggatgctgaccaagcagggcatcgacttcaagctcggcgccaaggtgacg
ggcgtcgtgaaatcgggcgacggtgccaaggtcaccttcgagcccgttaagggcggcgag
gccactacgctcgatgccgaagtcgtgctcatcgctaccggacgcaagccctcgacggac
ggcttgggtctcgccaaggcgggcgtcgtcctcgattcgcgtggccgcgtggagatcgac
cggcattttcagacgagcattgccggcgtctacgcgatcggcgacgtggtgcgtgggccg
atgctggcgcacaaggccgaggatgaaggtgtcgccgtggcggagatcatcgcaggtcag
gccggccacgtgaactacgacgtcattccgggcgtcgtctacacccagcccgaggtcgcc
tccgtcggcaagaccgaggaagagctgaaggctgcgggcgtcgcctacaagatcggcaag
ttccccttcaccgccaatggccgcgcccgcgccatgcttcagacggacggtttcgtgaag
attctcgcggacaaggagaccgaccgcgtgctcggcggccacatcatcggcttcggcgcc
ggcgaaatgatccacgagatcgcggtgctgatggagttcggcggatcgtcggaggacctc
gggcgcacctgccacgcccatccgacgatgtcggaggcggtaaaggaagcggcgctttcc
accttcttcaagccgatccacatgtga

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