Sinorhizobium meliloti SM11: SM11_chr2223
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Entry
SM11_chr2223 CDS
T01885
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smx
Sinorhizobium meliloti SM11
Pathway
smx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SM11_chr2223 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smx03021
]
SM11_chr2223 (rpoC)
03400 DNA repair and recombination proteins [BR:
smx03400
]
SM11_chr2223 (rpoC)
Enzymes [BR:
smx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SM11_chr2223 (rpoC)
Transcription machinery [BR:
smx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SM11_chr2223 (rpoC)
DNA repair and recombination proteins [BR:
smx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SM11_chr2223 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AEH79484
UniProt:
F7X2B9
LinkDB
All DBs
Position
complement(2195937..2200142)
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSEMAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDMGELHHALE
TKAVTLHAKIRGRYKTVDAEGNPVSKIYETTPGRMIIGELLPKNPNVPFETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDDSGRQKPMNSIYM
MSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTHTDCGTDKGLTMTAIVDAGQVVASIGQRILGRTA
LDNIDNPVTGERIVDAGKMILEPDVVAIEKAGIQSVRIRSALTCEIQTGVCGVCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRNM
LRNSDGVLVAMGRNMAIQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRFAEWDPYTR
PMMTEVEGTVHFEDVVDGISVLESTDESTGITKRQVIDWRSTPRGTDLKPAIVIKDKNGN
IAKLARGGEARFMLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRFGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDAGDSTYIVGDNVDRIELEDVNDSLLAEGKKPAFGEPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKTDNLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRKG
TGAESATPMLADMANDPAAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaccttcgattcc
atccggatttcgatagcgtccccggagaagattctttcctggtcttacggtgagatcaag
aagccggagacgattaactaccgtaccttcaagccggaacgcgacggtcttttctgcgcc
cgcatctttggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgc
gagcgcatgggccatatcgagctcgccgcgcccgttgctcacatctggttcctgaagtcg
ctgccgagccgcatcgcaacgctgctcgacatgacgctcaaggatatcgagcgcgtcctc
tacttcgagaactacatcgtcaccgagccgggtctgacgtcgctcaaggaaaaccagctc
ctgagcgaagaagaatacatgatcgcggtcgacgagttcggtgaggaccagttcaccgcg
atgatcggcgccgaagcgatctacgagatgctcgcatcgatgaatctcgagaagatcgcg
ggcgatctgcgttcggagatggccgagacgacgtccgatctgaagcagaagaagctgatg
aagcggctgaagatcgtcgagaacttcatggaatccggcaatcgtccggaatggatgatc
atgaaggtcgttccggtgatcccgccggacctgcgtccgctcgtgccgcttgacggcggc
cgtttcgcaacgtcggacctcaacgatctctaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgaactgcgtgcgccgggcatcatcatccgcaacgaaaagcggatg
ctgcaggaatccgtggacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggt
gcgaacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggcgaag
aagctggtcgagaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
cacccggttcttctgaaccgcgcgccgaccctgcaccgcctgggcatccaggccttcgag
ccgatcctggtcgaaggcaaggcgatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcacagctc
gaagcacgcgtgctgatgatgtcgacgaacaacatcctgcatccggcaaacggtgccccg
atcatcgtgccgtcgcaggacatggttctcggcctgtactatctctcgatcatgaaccag
aacgagccgggcgaaggcatggccttctccgacatgggcgaattgcaccatgcgctggag
accaaggccgtcaccctgcacgccaagatccgtggccgttacaagaccgtcgatgccgag
ggcaacccggtttcgaagatctatgaaacgacgcctggccgcatgatcatcggcgaactc
ctgccgaagaacccgaacgtccccttcgaaacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctatcgccattgcggtcagaaggacacggtcatcttc
tgcgaccggatcatgcagctcggcttctcgcatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtgattccggacacgaaggtgaagatcgtcggcgacaccgaagcgctc
gtgaaggaatacgagcagcagtacaatgacggcctcatcacccagggcgaaaagtacaac
aaggtcgtcgacgcctggggcaaggcgaccgagaaggtcgccgaagagatgatggcgcgc
atcaaggccgtcgagttcgacgacagcggccgccagaagccgatgaactcgatctacatg
atgtcgcactcgggcgcccgcggttctccgaaccagatgcgtcagcttggcggcatgcgc
ggcctcatggcaaagccttcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtgaacgagtacttcaactcgacgcacggtgcccgtaagggtctcgcc
gacaccgccttgaagactgcgaactccggttacctgacccgtcgtctcgtcgatgtggcg
caggactgcatcgtcacgcatacggattgcggcaccgacaagggcctcaccatgactgcg
atcgtcgatgccggtcaggtcgtggcctcgatcggccagcgtatcctcggccgtacggcg
ctcgacaacatcgacaacccggtcaccggtgagcgcatcgtcgatgccggcaagatgatt
ctcgagccggacgtcgtcgcgatcgagaaggccggtatccagtccgtccggattcgctcg
gctctgacctgcgagatccagaccggcgtctgcggcgtttgctacggccgtgacctcgct
cgcggtacgcctgtcaacatgggcgaagccgtcggcgtcatcgcggctcagtcgatcggc
gagccgggcacgcagctgaccatgcgtacgttccaccttggtggtacggcaacggtggtc
gaccagtcgttcctggaagcctcttatgagggcacggttcagatcaagaaccgcaacatg
ctgcgcaactccgatggcgtactcgtcgccatgggccgcaacatggcgatccagatcctc
gacgaacgcggtgtcgagcgctcctcgcagcgcgttgcctacggttcgaagatcttcgtc
gacgatggcgacaaggtgaagcgcggccagcgtttcgccgagtgggacccctacacccgt
ccgatgatgacggaagtggaaggtaccgttcacttcgaagacgtggtcgacggcatctcg
gttctggaatcgaccgacgagtcgaccggcatcaccaagcgccaggtcatcgactggcgt
tcgacgccacgcggtaccgacctgaagccggcgatcgtcatcaaggacaagaacggcaac
atcgccaagcttgcccgcggcggcgaagcccgcttcatgctctcggtcgacgcgatcctt
tccgtcgagccgggacagaaggtcagccagggcgacgttcttgcccgttcgccgctcgaa
agcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaggcg
cgtcgtccgaaggatcacgccatcatcgctgagatcgatggcacgatccgtttcggccgc
gattacaagaacaagcgtcgcgtgatgatcgagccggcggaagacggtgtcgagccggtc
gaatacctgatcccgaagggcaagcccttccatcttcaggatggcgactacatcgagaag
ggcgactacatcctcgacggcaatccggcgccgcatgacatcctggcgatcaagggcgtg
gaagcacttgcttcctatctcgtgaacgagatccaggaagtctaccgactgcagggcgtt
gtcatcaacgacaagcacatcgaggtgatcgtccggcagatgctccagaaggtcgaaatc
accgacgccggtgactcgacctatatcgtcggcgacaacgtcgatcgcatcgagctcgag
gacgtcaacgactctctgcttgccgaaggcaagaagcccgcctttggcgagccggtgctg
ctcggcatcaccaaggcatcgctgcagaccccgtccttcatctcggccgcttcgttccag
gagaccaccaaggtcctcaccgaagctgcggtcgcaggcaagacggacaatctgcagggc
ctgaaggagaacgtcattgtcggtcgtctcatcccggccggtacgggcggcacgatgaca
cagatccgccgcatcgctacggcccgcgacgagttgatccttgaagagcgacgcaagggc
accggtgcggaaagcgccacgccgatgctcgccgacatggcgaacgatcccgccgcggcg
gaataa
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