Sinorhizobium meliloti SM11: SM11_chr2285
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Entry
SM11_chr2285 CDS
T01885
Symbol
dnaE1
Name
(GenBank) putative DNA polymerase III alpha chain protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smx
Sinorhizobium meliloti SM11
Pathway
smx03030
DNA replication
smx03430
Mismatch repair
smx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SM11_chr2285 (dnaE1)
03430 Mismatch repair
SM11_chr2285 (dnaE1)
03440 Homologous recombination
SM11_chr2285 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smx03032
]
SM11_chr2285 (dnaE1)
03400 DNA repair and recombination proteins [BR:
smx03400
]
SM11_chr2285 (dnaE1)
Enzymes [BR:
smx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SM11_chr2285 (dnaE1)
DNA replication proteins [BR:
smx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SM11_chr2285 (dnaE1)
DNA repair and recombination proteins [BR:
smx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SM11_chr2285 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
AEH79542
UniProt:
F7X2Y4
LinkDB
All DBs
Position
complement(2261800..2265309)
Genome browser
AA seq
1169 aa
AA seq
DB search
MTGNQGIGQGIGHGTGAAADPQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIAD
TNNLFAALEFSQKAADDGLQPIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATED
GYARLVELVSRAYLEGEGHQQTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALA
EARLKALIELFGDRLYVELQRHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDA
HDALMAVAHNAMVSDDSRFRLTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKT
RGPILPRFTGASDDPEEAERAEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFEL
GVIQRMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFE
RFLNPERVSMPDFDIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVL
EMPYGQVDKICKLVPNNPANPTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRH
ASTHAAGIVIGDRPLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKT
AIDFVGKRGIHIDLASIPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDII
ALVALYRPGPMENIPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSG
YSLGEADLLRRAMGKKIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKS
HAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTS
HRHFETGDNRIYYSLAALKGVGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFES
LIAAGAFDCFGYDRAELIGGLDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYT
PWLASEKLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVT
SKQERKTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPGKSLVMTVDAEERPEGI
GLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASHLNAKGDGLVSFIVIKDNGQREIE
VELNEKYRISPEIAAALRSAPGVVDVELV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacaggcaaccagggtatcgggcagggtatcgggcacggcacaggggctgcggccgat
ccgcagttcgttcacctgcgggtgcattccgcctattcgttgctggaaggcgccttgccg
ctgaagaagatcatcggcaaggcggtcgccgacgatcagccggcgatcggcatcgccgac
accaataatctcttcgcggcactcgaattctcgcagaaggccgccgacgacggattgcag
ccgatcatcggctgccagctctcgatcgatatggaagacgaggcggaaggcgagcggcgc
ggacacgcccatcagttcgtcaaacttcccgcgatcgtgctgatcgcggcgaccgaggac
ggttacgcccgcctcgtcgagctcgtgagccgcgcctatctcgaaggtgagggtcaccag
caaacgcgaataagccgctcctggcttgcggctggcggcacgaccggcctgatcgcgctc
accggtgcgggagccggcccggtcgatatggcgctgaagtcgggttcgccggctctggcc
gaggcgcgcctaaaagccttgatcgagcttttcggcgatcgcctctatgtcgaactgcag
cggcacgggaattacgaccggcgtcacgagaaccgcatgatcgatctcgcctatcggctc
gacattccgctcgtcgccaccaacgaggcgtttttcccgtcgccgtccgactatgatgcc
cacgatgcgctgatggccgtcgctcacaatgcgatggtgtccgacgacagccgtttccgt
ctgaccccggatcattacctgaagagccgcaaggagatggcggcgctctttgcggatctg
cccgaggcattggagaatacgatcgaggtggcgcggcggtgctccttcatgttgaagacc
cgcggaccgatcctgccgcgctttaccggcgcttcggatgatccggaggaggctgaacgc
gcggaggtagcggaactgcgccggcaggcggaggaggggctggaggaacgccttgccaag
ctcggcatggcgcccggctacaaggaagaggactatcgggagcggctggccttcgaactc
ggcgttatccagcggatgaagtttccgggctacttcctcatcgttgcggacttcatcaaa
tgggccaagcagcatgacattccggtcgggccgggccgcggctcgggtgccggctcgctg
gtcgcctatgccctgacgatcaccgatgtcgatccgatgcgcttctcgctgcttttcgag
cgcttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgatttctgccaggac
cggcgcgaggaggtcatccgctacgtgcagcagaaatacggccgcgagcaggtggcgcag
atcatcaccttcggatcgctgcaggcgcgtgcagcactgcgcgacgtcggccgcgtgctg
gaaatgccctatggccaggtcgacaagatctgcaagctggtgccgaacaatcccgccaac
ccgacgccgctttccaaggcgatcgaggaggaaccgcgcctgcgggaagaggcggagaag
gagccggtcgttgcccgtctcctcgacattgcccagaagatcgaggggctttaccgccac
gcctcgacgcacgcggccggcatcgtcatcggcgacaggccgctctcgcagctcgtgccg
atgtaccgcgatccgcgctccgacatgccggtgacccagttcaacatgaaatgggtcgag
caggcgggtctcgtgaagttcgacttccttggcctgaagacgctgaccgttctgaagacc
gccatcgacttcgtcggcaagcgcggcatccatatcgacctcgcaagcattccgctcgac
gatccgaagacctacgagaccctttcgcgtggcgagacggtcggcgtgttccaggtggaa
agcgccggcatgcgcaaggcgctgatcggcatgcgcccggactgcatcgaggacatcatc
gcgctcgtggcgctctatcgcccgggtccgatggagaacatcccggtctacaacgcccgc
aagcacggcgaggaggagatcgaatcgatccatccgaagatcgattacctgctcaaggag
acgcagggcgtcatcgtctaccaggagcaggtgatgcagatcgctcaggtgctctcgggc
tattcgctcggcgaggctgacctcctgcgccgcgccatgggcaagaagatcaaggcggag
atggacaagcaacgcgcccgcttcgtcgatggcgccgtcaagaatggcgtctcgaagccg
caggccgacctgatcttcgaccttcttgccaagttcgccaattacggcttcaacaagtcg
catgccgccgcctacgccatcgtctcctaccagaccgcctacatgaaggcgcattatccg
gtcgagttcctcgcagcgtcgatgacgctcgacatgtcgaacacggacaagatcaacgat
ttccgtcaggacgcgatgcgcctcggcattcaggtggtcgcgccgtccgtgcagacctcc
caccgccacttcgaaaccggcgacaaccgcatctattactcgctcgccgccctaaagggc
gtcggcgagtctgccgtcgaccacatcgtcgccgtgcgtggcgatcgacccttcgcaagt
ctcgaagacttctgcctgaggatcgatccgaagctcttgaaccgacgggttttcgaaagt
ctgatcgccgccggtgctttcgactgcttcggctacgaccgggcggagctcatcggcggg
ctcgatcgcatcctcggtttcgcgcagcgcgcccaggaaaacaaggtgagcggccagagc
gacatgttcggcgcgggggccgcgacggggcccgagaagatagcgctcccgccctatacg
ccgtggctcgcctcggagaagctgcatcgcgagttccaggtcttgggcttctatctctcc
gcccatccgctcgacacctacaataatctgctcgcgaagatgcgcgtgcagacatttgcg
gatttctcggcagccgtgaaaaagggagcggcggcgggccgcctcgccggtacggtgacg
tcgaagcaggaacgcaagacgcgcaccggcaacaagatggggatcgtcgccttctcggac
gcttcgggccagttcgaggccgtgctcttctccgaaatgctgaaccagtatcgcgatctt
ctggagcccggcaaatcgctggtgatgacggtcgacgccgaagagcggccggaagggatc
ggccttcgtatccgaaccctgcgttcgctcgaggaggaatcgctgcagatgcagaaggcc
ttgcgcgtctatgtgcgcgactgcggaccgctgcgctccatcgcctcgcatctgaacgcc
aagggggacggcctggtttcctttatcgtcatcaaggacaacggacagcgggagatcgaa
gtcgagctcaacgagaaataccggatctcacccgagatcgccgccgcccttcgctccgct
cccggagtggtggacgtcgagctggtttaa
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integrated database retrieval system
