KEGG   Sinorhizobium meliloti SM11: SM11_pC1486
Entry
SM11_pC1486       CDS       T01885                                 
Name
(GenBank) conserved hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smx  Sinorhizobium meliloti SM11
Pathway
smx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SM11_pC1486
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smx03400]
    SM11_pC1486
Enzymes [BR:smx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SM11_pC1486
DNA repair and recombination proteins [BR:smx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SM11_pC1486
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M
Other DBs
NCBI-ProteinID: AEH82559
LinkDB
Position
pSmeSM11c:complement(1382432..1385068)
AA seq 878 aa
MADNLSKYRAKRDFKKTREPSGEAQVKQSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
LTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYSVDENGAAILEENA
TSIASARSMEQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDLATSTA
ADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQMRVADGKVTLKTRKGLDWTAKYPE
IADAASELPDCIIDGEICALDDNGAPDFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLVERKKRLGDFLAAGSDDPRIRYVDHFESGGDAVLRSACKLSLEGIVSKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYATTNGKFRSLLVGVHRGDHFVYVGRVGTGFGAAKVERFF
PKLKALEASKSPFTGIGAPKKEKEVTWLKPELVAEIEFAGWTADGLVRKAAFKGLREDKP
AKEVQAEKPSPPAKTDTPEPGPSVKTRPVRRKGAKAEVMGVLISSPDKPLWPDAGDGEPV
TKEDLVRYHEAVGTWLIDHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLKLVKVFGD
KKPYLQIDRIEGLAAIAQIGGIELHPWNCEPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
EMRDRLDELGLVSFCKTTGGKGLHVVTPFAVNKRKPLSWAEAKGFAHDVCEQMARDNPDL
YLIKMSKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLNWTQVKSDLYPKRFT
VRTVPALLAKTTAWQDYCDGERPLEQAIKRLGKSRRAA
NT seq 2637 nt   +upstreamnt  +downstreamnt
atggctgacaatctttcgaaataccgtgccaagcgcgatttcaagaagaccagagaacca
agcggcgaggctcaggtcaagcagtcgaaccgccggcggttcgtgatccagaagcacgac
gccacccggcttcactatgatctgcggcttgaactggacggggtgttcaagagctgggcg
ttgaccaagggcccatcgctcgatcctagtgacaagcgactggccgtcgaagtcgaagat
cacccgctcgactatggcgacttcgaaggcacgattccaaagggccagtatggcggcggc
acggtcatgctatgggaccgcggctattgggagccagaaggtaggaagtcgcctgaagag
gccctgaagaagggcgacttcaagttcacgcttcatggcaagcggctgcatggcagcttc
gtcctggtgcggatgcgcaacgatcgcgatggcggcaagcggaccaactggctgctcatc
aaacatcgtgacgattactccgttgacgagaacggcgcggcaatcctggaggagaacgcg
acttccatcgcctccgcccgcagcatggagcagatcgccgagggcacgggccgcaagccg
cgaccgttcatgatggcgaacgcggatgtcgaggcagatgccgtctgggacagcaagcat
ggcttggcagcggaagagcgcaagaaggggtctcgcagggatctcgcgacctccacggca
gccgacctgccggattttatcgagccgcagctctgcgagacgcttgcgcggccgccggcc
agcgacgactggctgcatgagatcaagttcgacggttatcggatccagatgcgggttgcc
gacggtaaggtgacgctgaagacgcgcaagggtctcgactggaccgcgaaatatccagag
atcgccgatgctgcgtccgaattgcccgattgcatcattgatggcgaaatctgcgccctc
gacgacaatggcgcgcccgatttcgcagcactccaggccgcgctctcggaaggcaagacc
ggcaaccttgtctacttcgccttcgacctgctgtttgatggcggcgaggacttgcggtcg
atgcgattggtcgagcggaagaagcggctcggagacttcctcgcggccgggagcgacgat
ccgcgtatccgctacgtcgatcacttcgaatccggcggtgacgcggtgcttcgctccgcc
tgcaagctgtcgctcgaaggtatcgtctccaagcagatggatgcgccctaccaatcgggc
cgcaccgacacctgggcgaagtcgaaatgccgggctggtcatgaggtggtgatcggtggc
tatgctacgaccaacggcaagtttcgatctctcctggtcggcgttcaccgcggcgatcac
ttcgtctatgtcggccgggtcggcacgggcttcggcgccgcgaaggtcgagcggttcttt
cccaagctgaaggcgttggaagcatcgaagtcacccttcaccggcatcggtgcgccgaaa
aaggagaaggaagtcacctggctgaaaccggagctcgttgccgagatcgagttcgccggc
tggacggccgacggcctagttcgtaaggcagccttcaaaggcctgcgcgaggacaagccg
gcgaaagaggtccaggccgagaagccgtcaccgcccgccaagaccgacacgcccgagcct
gggccgtccgtcaagaccagaccggtgcggcgcaagggcgccaaggccgaggtcatgggc
gtcctcatctccagtcccgacaagccactctggccggacgccggcgatggcgaacccgtg
accaaggaagatctcgtccgctaccatgaagccgtcggaacctggctcatcgatcacatc
aagggccggccctgctcgatcattcgagcgcccgacggcattggcggcgagcagttcttc
cagcgccatgcgatgccaggcacctccaatctgctcaaactggtgaaagtcttcggggac
aagaagccctaccttcagatcgatcggatcgaagggctcgcggcgatcgcccagatcggc
ggaatcgaactacatccgtggaactgcgaacccggcaagccggaagtgcccggccgtctg
gtgttcgatctcgatcctggtcccgacgtgccgtttgcgacagtggtcgcggccgcgcgg
gaaatgcgtgaccggctcgacgagctcggcctcgtcagtttctgcaagaccaccggcggg
aagggattgcatgtcgtcacgccattcgctgtgaataagcgcaagcctttgtcatgggcc
gaggctaagggattcgcgcatgacgtttgcgagcaaatggcgcgcgataatcccgatctt
tatctcatcaagatgagcaagagcctcaggggcggaaggatcttcctcgattatctccgc
aacgaccgcatggcgaccgccgtggcgccactgtcgccgcgcgcacggcccggcgccaca
gtctcgatgccgctcaactggacgcaggtgaagtccgatctctacccgaagcggtttacc
gtccgcaccgtgccggcgctgcttgcgaaaaccactgcctggcaagactattgtgatggc
gagcggccgctcgaacaggcgatcaagcgcctcggaaaatcaagacgggctgcgtga

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