Sphingomonas melonis: BJP26_00705
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Entry
BJP26_00705 CDS
T04509
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
smy
Sphingomonas melonis
Brite
KEGG Orthology (KO) [BR:
smy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smy03016
]
BJP26_00705
Enzymes [BR:
smy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
BJP26_00705
Transfer RNA biogenesis [BR:
smy03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
BJP26_00705
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AOW22258
UniProt:
A0A175Y0U4
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All DBs
Position
133303..133887
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AA seq
194 aa
AA seq
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MLRLFVALRPPRAIRESLIAAMGGVPHARWQDDEQLHCTLRFLGEVDRPQAEDVAAALGG
IHAPAPVARIAGVGRFEHKGRTDTLWAGLAPHEALRHLARKVDQACVRAGLAPERRAYLP
HITLARLPRSAGMAPEIEGWLAVHAGLTSADFACPHIVLYQSHLGHGGASYEPVARWPLV
TAAEPALSLPGSAG
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgtctcttcgtcgcgctccgcccgccccgcgccatccgtgaatcgctgatcgcc
gcgatgggcggcgtgccgcatgcgcgctggcaggacgacgagcagttgcattgcaccctg
cgcttcctcggcgaggtcgaccgaccgcaggcagaagacgtcgcggcggcgctcggcggc
atccacgcgcccgcgcccgtggcgcggatcgcgggcgtcgggcggttcgagcacaagggg
cggacggacaccttatgggccggcctcgccccgcacgaagcgctgcgccatctggcgcgc
aaggtcgatcaggcgtgcgtacgcgccgggctggcaccggaacgccgcgcctatctgccg
cacatcacgctcgcccggctgccgcgtagtgcgggcatggcgcccgagatcgagggctgg
ctggcggtgcatgcaggccttaccagcgccgacttcgcctgcccgcatatcgtgctgtac
cagagccacctgggccatggcggcgcaagttacgaacccgtcgcccgctggccgctggtg
acggcggcggaaccggcactgtcgctgccgggttcggccgggtaa
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