Sphingomonas melonis: BJP26_04310
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Entry
BJP26_04310 CDS
T04509
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
smy
Sphingomonas melonis
Brite
KEGG Orthology (KO) [BR:
smy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smy03016
]
BJP26_04310
Enzymes [BR:
smy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BJP26_04310
Transfer RNA biogenesis [BR:
smy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BJP26_04310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
DUF3073
Motif
Other DBs
NCBI-ProteinID:
AOW22883
UniProt:
A0A175XZC8
LinkDB
All DBs
Position
complement(862124..862744)
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AA seq
206 aa
AA seq
DB search
MTVHFHEEDLPADVFAPGASIAVDTETMGLITPRDRLCVVQLSDGGPDEHLVRFGPDSDY
AAPNLKAVLADPARLKLYHFGRFDIAAVQHYLGVVAAPAYDTKIASRLIRTYTDRHGLKE
LVRELLGQELSKQQQSSDWGSPELSDAQKDYAASDVRFLHRLKAELDRRLNREGRMELAQ
QCFDFLPTRAALDLAGWPEIDIFAHA
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttcacttccacgaggaagacctccccgccgacgtcttcgctcccggcgcatcg
atcgccgtcgacaccgaaaccatgggcctcatcacgccccgcgatcgcctgtgcgtcgtg
cagctgtccgatggcggcccagacgaacatctcgtgcgcttcggccccgacagcgattat
gccgcaccgaacctgaaggcggtgctcgccgatcccgcgcgcctgaagctctatcacttc
ggccgcttcgatatcgccgcggtccagcattatctcggcgtggtcgccgcgcccgcatac
gacaccaagatcgcctcgcgcttgatccgcacctacaccgatcgccatggcctgaaggaa
ctggtccgcgaactgctggggcaggaactcagcaaacagcagcaatcgtccgactgggga
tcgcccgagctcagcgacgcgcaaaaggattatgcggccagcgacgtgcgcttcctccac
cgcctgaaggccgagctggaccgccgcctgaaccgcgaaggccgcatggagctggcgcag
cagtgtttcgacttcctgccgactcgcgccgcgctcgatctcgccggctggcccgaaatc
gacatcttcgcgcatgcctga
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