Sphingomonas melonis: BJP26_06355
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Entry
BJP26_06355 CDS
T04509
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smy
Sphingomonas melonis
Pathway
smy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP26_06355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smy03019
]
BJP26_06355
Enzymes [BR:
smy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJP26_06355
Messenger RNA biogenesis [BR:
smy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJP26_06355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOW23245
UniProt:
A0A175Y1S0
LinkDB
All DBs
Position
complement(1306640..1307995)
Genome browser
AA seq
451 aa
AA seq
DB search
MSFAHLGLAEPLVRALEAKGYATPTPIQAQSIPILLEGNDLLGIAQTGTGKTAAFVLPSI
QRLVAAQKRVLPTHVRMLVLAPTRELASQIADNARGYGQFSKLSVATVFGGTSINKNRQD
LSRGVDILVATPGRLIDLVEQGMCNLSMIEILVLDEADQMMDLGFIHALKKIVRMIPRKR
QTLFFSATMPTAIRDLAGQFLTNPKTVSVVPESTTAERVDQYVTFVNQTEKQALLTLVLQ
DPAIDRALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFKDGKTKVLVA
TDIAARGIDVSGVSHVVNFELPNVAEQYVHRIGRTARAGNSGIAIAFCADDERPYLKDIE
KITRQKVTVRPLPDNFTGLANEIKATRVKAIGADPAPRADLPRGQRQPARPRATHAPTAT
RNYANASRRGGGGGRGRSGGGGRGQGAGAAR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgctcatctcggcctcgccgagccgctcgtccgtgcgctcgaggccaagggc
tatgccacccccacgccgatccaggcgcagtcgattccgatcctgctggaaggcaatgat
ctgctcggtatcgcgcagaccggcaccggcaagaccgcggcgttcgtgctgccgtcgatc
cagcgcctagtcgccgcgcagaagcgcgttctgccgacgcatgtccgcatgctcgtcctc
gcgcccacgcgcgaactcgccagccagatcgccgacaatgcgcgcggctatggccagttt
tccaagctcagcgtcgcgaccgtgttcggcggcaccagcatcaataagaaccgccaggac
ctgagccgcggcgtcgacattctcgtcgcgacgccgggccgcctgatcgacctggtcgag
cagggcatgtgcaacctgtcgatgatcgagatcctggtcctcgacgaagccgatcagatg
atggacctcggcttcatccacgcgctcaagaagatcgtgcggatgatcccgcgcaagcgc
cagacgttgttcttctcggcgacgatgccgacagcgatccgcgatctcgccggccagttc
ctcaccaacccgaagaccgtgtcggtggtgccggaatcgaccaccgccgagcgcgtcgac
caatatgtcaccttcgtcaaccagacggagaagcaggcgctgctgacgctggtgctgcag
gacccggcgatcgaccgcgcgctcgtcttcacgcgcaccaagcatggcgccgaccgtgtc
gtgaagctgctcgccggcaacggtatcgcggccaacgctatccacggcaacaagagccag
ggccagcgcgaacgggccttgggtgagttcaaggacggcaagaccaaggtactggtcgcc
accgatatcgccgcgcgcggcatcgacgtgtcgggtgtcagccatgtcgtcaacttcgag
ctgccgaacgtcgcggaacagtacgtccaccgcatcggccgcactgcgcgcgcgggcaac
agcggtatcgccatcgccttctgcgccgatgacgagcggccgtacctgaaggacattgag
aagatcacgcgccagaaggtgaccgtgcgtccgctgccggacaatttcaccggcctcgcc
aacgagatcaaggcgacgcgcgtcaaggcgatcggtgcggaccccgcaccgcgcgccgac
ctgccgcgcggccagcgccagccggcccgcccgcgcgcgacgcatgcgccgaccgcgacg
cgcaattacgccaacgccagccgtcgtggcggcggtggcggccgcggccgctcgggcggc
ggtggccgtggacagggtgccggcgccgcgcgttga
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