Sphingomonas melonis: BJP26_11590
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Entry
BJP26_11590 CDS
T04509
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smy
Sphingomonas melonis
Pathway
smy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP26_11590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smy03019
]
BJP26_11590
03009 Ribosome biogenesis [BR:
smy03009
]
BJP26_11590
Enzymes [BR:
smy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJP26_11590
Messenger RNA biogenesis [BR:
smy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJP26_11590
Ribosome biogenesis [BR:
smy03009
]
Prokaryotic type
rRNA helicases
BJP26_11590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
AOW24131
UniProt:
A0A175Y338
LinkDB
All DBs
Position
2464544..2466280
Genome browser
AA seq
578 aa
AA seq
DB search
MPFSSLPPLLAEALVARGYEAPTAVQAAVIEPEAAGRDLVVSAQTGSGKTVAFGLAMAGE
LLVDGTLPPPGLPLALIIAPTRELALQVSRELMWLYKEAHARIATCVGGMDASKERRSLS
HGAHIVVGTPGRLRDHLERGALDLSALRVAVLDEADEMLDMGFREDLEQILDSSPSERRT
LMFSATMPKPIVALAKRYQNDALRISTVGETRGHGDIQYQAVTVAPADIEHAVINLLRFH
EAETAILFCATRDNVRHLHASLVERGFAAVALSGEHSQNERNQALQALRDRRARVCVATD
VAARGIDLPSLTLVIHVEMPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVDMMLKQ
AKIACDWIPAPSADDIRKQDRERLIATLLEPIEYDDEDRELAQRLIAEKSPEDIAAALVH
AHRAAMPQAEDLLDSAAPQQSERQQGPRPGFEDTVWFRMDIGRRQNADPRWLLPLICRRG
HITKAEIGAIRINPNDTLFEVPRTVADRVLASVQRTANPESDEGSLQIVPFAGNPRAEGG
HGGGPRGPRAPRDNAGRPRTGGAPARHQAKPYRKGPRG
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttcctccctgcccccgcttcttgctgaagcgctcgtcgcccgtggctatgaa
gcgcccaccgccgtccaggccgcggtgatcgaacccgaagccgccggccgcgacctcgtc
gtctccgcccagaccggttcgggcaaaacggtcgccttcggtctcgccatggcgggcgaa
ctgctcgtcgacggcacgctgccgccgccgggcctccccctcgcgctgatcatcgcgccg
acgcgcgaactggcgctgcaggtcagccgcgagctgatgtggctttataaggaagcgcat
gcgcgcatcgccacctgcgtcggcggcatggacgccagcaaggagcgtcgctcgctcagc
cacggcgcgcatatcgtcgtcggcacgccgggccgcctgcgcgatcacctcgagcgcggc
gcgctcgacctgtcggcgctgcgcgtcgccgtgctcgacgaggcggacgagatgctcgac
atgggcttccgcgaagacctggagcagatcctcgattcgtcgccatccgaacgccggacg
ctgatgttctcggcgacgatgcccaagccgatcgtcgcgctcgccaagcgctaccagaat
gacgcgctgcgcatctcgaccgtcggtgagacgcgtggccacggcgacatccaatatcag
gcggtcaccgttgcgcccgccgatatcgaacatgccgtcatcaacctgctccgcttccac
gaagcggagacggcaatcctgttctgcgccacccgcgacaacgtccgccacctccacgcc
agcctcgtcgagcgcggcttcgcggcggtggcgctgtcgggcgaacacagccagaacgag
cgcaaccaggcgttgcaggcgctgcgggaccgccgcgcccgcgtctgcgtcgcgaccgac
gtcgctgcgcgcggcattgatctgcccagcctgacgctcgtgatccacgtcgaaatgccg
cgcgacgccgaaacgctgcagcaccgctcgggccgcaccggtcgcgcgggcaagaagggc
accgcggtgctcatcgtcccctatccgcgccgccgccgcgtcgacatgatgctgaagcag
gccaagatcgcctgcgactggatccccgccccgtcggccgacgacatccgcaaacaggat
cgcgagcgcctgatcgcgacgctgctcgaaccgatcgaatatgacgacgaggatcgcgag
ctggcgcagcgcctgattgccgaaaagtcgcccgaggatatcgccgccgcgctcgtccac
gcgcaccgcgccgcgatgccgcaggcggaagacctgctcgattcggcagcgccgcagcag
agcgaacgtcagcagggtccccgccccggcttcgaggataccgtctggttccgcatggac
atcggccgccgccagaatgccgacccgcgctggctgctgccgctgatctgccgccgcggc
cacatcaccaaggcggaaatcggcgcgatccgcatcaacccgaacgacacgttgttcgaa
gtgccgcgcaccgtcgccgaccgcgtactggccagcgtacagcgtaccgccaacccggaa
agcgacgaaggcagcctgcagatcgtccccttcgccggcaatccgcgtgccgagggcggt
catggcggcggtccgcgcggtccccgcgcgccgcgtgacaatgccggtcgcccgcgtacc
ggcggtgcgcccgcgcggcatcaggccaagccgtatcgcaagggcccccgcggttaa
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