Sphingomonas melonis: BJP26_15845
Help
Entry
BJP26_15845 CDS
T04509
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smy
Sphingomonas melonis
Pathway
smy03410
Base excision repair
smy03430
Mismatch repair
smy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BJP26_15845
03430 Mismatch repair
BJP26_15845
03440 Homologous recombination
BJP26_15845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smy03400
]
BJP26_15845
DNA repair and recombination proteins [BR:
smy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BJP26_15845
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BJP26_15845
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BJP26_15845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AOW24843
UniProt:
A0A175Y7K9
LinkDB
All DBs
Position
complement(3400187..3401941)
Genome browser
AA seq
584 aa
AA seq
DB search
MSPVLGVTHSILGQPWHWRSLAADGRDGFGTDDLVTQLLLARGAPREALEQHRAPSIRAF
MPDPSVFRDMDRAAVRLADAVEARESIAVFGDYDVDGATSAALLILVLRDLGIEARPYIP
DRLLEGYGPSGDALVRLAQEGASLIVTVDCGAQAFDALDMAHAHPVDVVVVDHHKCAAAL
PRAHALVNPNRLDEDEGAAHGHLAAVGVCFLLAAALIRELRRRGVFASRAEPRLIDHLDI
VALGTVADVAQLRGLNRAFVAQGLKVMAQRRNIGVDALIQASRLTRAPTCSDLGFALGPR
INAGGRVGRADLGVRLLTTQDPAEARSIAEELDRLNDERRLIESGVQEAADAMIASDRAV
AVVAGEGWHPGVIGIVAGRLKEKLGRPAIVIAIDEHGVGKGSGRSIAGVDLGAAVLAAKE
HGLLVAGGGHAMAAGLTIAADQVAAFTDFLEERLAAAVTRAIGERALLVDAVLAPGGVNP
ALVDSLDVGGPYGMGWPAPRIAAGPVRIIKADVVGNGHVRAIVAGDDGRSFKAVAFRAAD
SALGQALLAAAPHRRLWLAGRAKIDDWGSRPAAELHLEDAAWAD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtcccccgttctcggcgttacccactcgattctcggccagccctggcattggcgcagt
cttgccgccgacgggcgagacggcttcggcaccgacgatctcgtcacacagttgctgctc
gcccgcggtgccccgcgcgaggcgctggagcagcatcgcgcgccctcgatccgcgcattc
atgcccgacccctcggtcttccgcgacatggaccgcgccgccgtccgcctcgccgacgcg
gtcgaagcccgtgagagcatcgccgtcttcggcgattacgacgtcgacggcgccacctcc
gccgcccttctcatcctcgttctgcgcgacctcggcatcgaggcccgcccctatatcccc
gaccgcctgctcgaaggctatggcccgtcgggcgacgcgctcgtccgcctggcgcaggaa
ggcgcctcgctgatcgtcaccgtcgattgcggcgcgcaggcgttcgatgcgctcgacatg
gcgcacgcccacccggtggacgtcgtcgtcgtcgaccaccacaaatgcgccgccgccctc
ccccgcgcccatgctctggtcaatcccaaccggctcgacgaggacgaaggcgccgcgcat
ggccacctcgccgcggtcggcgtttgcttcctgctcgccgccgcgctgatccgcgagctg
cgccgccgcggtgtcttcgccagccgcgccgaacccaggctgatcgaccatctcgacatc
gtcgcgctcggcaccgtcgccgacgtcgcgcaattgcgcggcctcaaccgcgcgttcgtc
gcgcaggggctgaaggtgatggcgcagcgccgcaacatcggcgtcgacgcgctgatccag
gcgtcgcgcctcacccgcgcgccgacgtgcagcgacctcggcttcgcattgggcccccgc
atcaacgcgggtggccgcgtcggccgggccgacctcggcgtacgcctgctcaccacgcaa
gaccccgccgaagcccgctcgatcgccgaggagctcgaccgcctcaacgacgagcgccgc
ctgatcgaaagcggcgtacaggaagccgccgatgcgatgatcgcgagcgaccgcgcggtc
gccgtcgtcgcgggcgagggctggcaccccggcgtcatcggcatcgtcgccgggcgattg
aaggaaaagctcggccgccccgcgatcgtcatcgcgatcgacgaacacggcgtcggcaag
ggatcgggccggtcgatcgccggcgtcgacttgggcgctgcggtactcgccgccaaggaa
cacggcctgctcgtcgccggcggtggccatgcgatggccgcaggcctcaccatcgccgcc
gatcaggtcgccgctttcaccgactttctagaagagcgcctcgccgccgccgtcacccgt
gcgatcggcgagcgtgcgctgctggtcgacgccgtgctcgcccccggcggcgtcaatccg
gcactggtcgattcgctcgatgtcggcggcccctatggcatgggctggcccgcgccgcgc
attgccgctggcccggtccgcatcatcaaggccgacgtggtcggcaacggccatgtccgc
gccatcgtcgcgggcgacgacggccgcagtttcaaggcggtcgccttccgcgccgccgac
agcgcgctggggcaggcgctgctcgccgccgccccgcaccgtcgcctgtggctcgccggc
cgcgccaagatcgacgattggggcagccgccccgccgccgaactgcatctggaagacgcc
gcctgggccgattga
DBGET
integrated database retrieval system
