Stenotrophomonas maltophilia D457: SMD_0004
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Entry
SMD_0004 CDS
T02061
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
smz
Stenotrophomonas maltophilia D457
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smz03032
]
SMD_0004 (gyrB)
03400 DNA repair and recombination proteins [BR:
smz03400
]
SMD_0004 (gyrB)
Enzymes [BR:
smz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SMD_0004 (gyrB)
DNA replication proteins [BR:
smz03032
]
Prokaryotic type
DNA Topoisomerases
SMD_0004 (gyrB)
DNA repair and recombination proteins [BR:
smz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SMD_0004 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CCH10607
LinkDB
All DBs
Position
4907..7366
Genome browser
AA seq
819 aa
AA seq
DB search
MSDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA
LAGHADHVAVTIHADGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFD
DNSYKVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTKRGT
TVRFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGDGRRDDFHYEGGIRS
FVEHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAG
FRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSD
VRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLP
GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSS
DQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIER
GYVYIGLPPLYKIKQGKQELYLKDDPALDSYLASSAVENAALVPATGEPGIEGLALEKLL
LAYAAALDSIERNAHRYDRNLLEALVDFVPMDMDSLRNAGEGEGLDALAKRLNQGSLGSP
RFSLELQEANEERPAAVLVTRRHMGEEHIQVLPLSAFESGELRAIHQASKLLHGLVREGA
TISRGAKSIEVDSFAKAQNWLLEEAKRGRQIQRFKGLGEMNPEQLWDTTVNPETRRLLQV
RIEDAVAADQIFSTLMGDVVEPRRDFIEDNALKVANLDI
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaacagaacaccccggcaaacaacggcaattacgacgccaacagcatcacc
gccctggaaggcctggaggctgtccgcaagcgacccggcatgtacatcggcgacgtgcat
gacggcaccggtctgcaccacatggtgttcgaggttgtcgacaactcgatcgacgaagcg
ctggccggccacgccgaccatgtcgcggtgacgatccacgccgacggctcggtctcggtg
tccgacaacggtcgcggcattccgaccggcaagcacgagcagatgagcgccaagctcggt
cgcgaagtgtcggctgccgaagtggtgatgaccgtcctgcacgcaggcggcaagttcgac
gacaacagctacaaggtgtccggcggcctgcacggcgtcggcgtcagcgtggtcaacgcg
ctgtcgcagaagctgctggtggacgtgttccagaacggcttccactaccagcaggaattc
agcaacggcgccgccgtgaccgcgctggccaagctggaaaccaccaccaagcgcggcacc
accgtgcgcttctggccgtcgaccgtcgccttccacgacaacgtggaattccactacgac
atcctggctcgccgcctgcgcgagctgtcgttcctgaactccggcgtcaagatcgtcctt
gccgacgaacgtggcgatggccgtcgtgatgacttccactacgaaggcggcatccgcagc
ttcgtggagcatctggcccagctgaagaccccgctgcacccgaacgtcatctcggtcacc
ggcgagcacaacggcatcgtcgtggatgtggcgttgcagtggaccgactcctaccaggag
acgatgtactgcttcaccaacaacattccgcagaaggacggcggcacccaccttgccggc
ttccgcggtgcgctgacccgtgtgctcaacaactacatcgagcagaacggcatcgccaag
caggccaagatcaacctgaccggcgatgacatgcgcgaaggcatgatcgcggtgctgtcg
gtgaaggtgccggacccgagcttctccagccagaccaaggaaaaactggtcagctccgac
gtgcgcccggcggtggaaaacgccttcggcgcgcgcctggaagagttcctgcaggaaaac
ccgaacgaagccaaggcgatcgccggcaagatcgtcgacgctgcgcgtgcacgcgaagcg
gcgcgcaaggcccgcgacctgacgcgccgcaagggcgcgctggatatcgccggcctgccg
ggcaagctggccgactgccaggaaaaggacccggcgctgtccgaactgttcatcgtcgag
ggtgactcggcaggtggctcggccaagcagggccgcaaccgcaagaaccaggcggtgctg
ccgctgcgcggcaagatcctcaacgtggaacgcgcacgcttcgaccgcatgctgtcctcc
gaccaggtgggtacgctgatcaccgccctgggcaccggcatcggccgtgacgagtacaac
ccggacaagctgcgttaccacaagatcatcatcatgaccgacgccgacgtcgacggcgcc
cacatccgcactctgctgctgaccttcttctaccgtcagatgccggagctgatcgagcgc
ggttatgtctacatcggcctgccgccgctgtacaagatcaagcagggcaagcaggagctg
tacctgaaggacgacccggcgctggacagttacctggccagcagtgcggtggaaaacgcc
gcgctggtgccggccaccggcgaaccgggcatcgaaggcctggcgctggaaaagctgctg
ctggcctatgccgccgcgctcgattccatcgaacgcaatgcccaccgctatgaccgcaac
ctgctcgaagcgctggtcgatttcgtgccgatggacatggacagcctgcgcaatgcgggc
gaaggcgaaggcctggatgcgctggccaagcgcctcaaccagggcagcctgggcagcccg
cgtttcagcctggaactgcaggaggccaacgaggagcgccccgccgccgtgttggtgacc
cgtcgccacatgggcgaggagcacatccaggtgctgccgctgtcggcgttcgaaagtggc
gaactgcgtgcgatccaccaggcctccaagctgctgcacgggctggtgcgcgaaggtgca
acgatttcccgcggcgccaagtcgatcgaagtcgacagcttcgcgaaggcgcagaactgg
ctgctcgaggaggccaagcgcggccgccagatccagcgattcaagggtctgggtgaaatg
aatccggagcagttgtgggataccacggtgaacccggagacccgtcgcctgctgcaggtg
cgcatcgaggatgcggtcgctgccgaccagatcttcagcaccctgatgggcgatgtggtc
gaaccgcgtcgtgacttcatcgaagacaatgcgctgaaggtcgccaacctggatatctga
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