Stenotrophomonas maltophilia D457: SMD_0517
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Entry
SMD_0517 CDS
T02061
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smz
Stenotrophomonas maltophilia D457
Pathway
smz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMD_0517 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smz03019
]
SMD_0517 (rhlE)
Enzymes [BR:
smz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMD_0517 (rhlE)
Messenger RNA biogenesis [BR:
smz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMD_0517 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
CCH11104
LinkDB
All DBs
Position
complement(590913..592346)
Genome browser
AA seq
477 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL
QHLGTASQEVRAGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL
DILRRGVDLLVACPGRLIDHLERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLH
LLAQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTV
LVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLR
AIVRLLGRDMDIRDVPGFELQTPIRWGNSAPGKAEHDTGERAPRKSHARRPHGDAPRHAH
AGPKKAGGGRREGGGNGQQRAGAGAGQGQRRGGGGGGGGNGGGRGRGHGGNGGGRAG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatcgctgggcctggcgcccttcctgctgcgcgcgctcgccgagcagggc
tacgaaaacccgaccccgatccagcagcaggcgatcccgctggcgctggccggtcgcgac
ctgctggccggcgcacagaccggcaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcaccgcctcgcaggaggtacgtgccggcccgcgcaagccacgcgcgctg
atcctggccccgacccgcgagctggccacccaggtgcatgacagcctgcgtggctacagc
aagtacctgcgcatccccagcgcctgcatctacggcggcgtcggcatgggcaaccagctg
gacatcctgcgccgtggcgtggacctgctggtggcctgcccgggccgcctgatcgaccac
cttgagcgtcgcagcgtcgacctgtccggcattgaagtgctgatcctggacgaagccgac
cgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctggccaagctgccgaag
cagaaccgccagaccctgctgttctcggccaccttcgaggacaacatccgccagttggcg
ctggagttcatgcgcaacccggaacagatccaggtgacgccgaagaacaccgtggccgaa
accatcacccaccgcgtgcatccggtcgacgccggccgcaagcgcgacctgctgctgcac
ctgctggcgcaggacagccgcgagcagaccctggtgttcgcccgcaccaagcatggcagc
gacaagctggccacgttcctggaaaagtcgggcatcaagaccgcggcgatccacggcaac
aagagccagggccagcgcctgcgtgcgctgggtgacttcaaggccggccgcgtgaccgtg
ctggtggccaccgacatcgccgcgcgcggcatcgacatcaacgagctgccgaaggtgatc
aacttcgacctgccgatggtggccgaggactacgtgcaccgcatcggccgcaccggccgc
aacggcgcgaccggccaggcgatttcgctggtggcgcaggatgaagtgaagctgctgcgc
gcgatcgtgcgcctgctgggccgcgacatggacatccgcgatgtgccgggcttcgagctg
cagacgccgatccgctggggcaacagtgcgccgggcaaggccgagcacgataccggtgag
cgcgcaccgcgcaagagccacgcgcgccgtccgcacggcgatgcgccgcgccatgcgcat
gctggcccgaagaaggccggtggtggccgccgcgagggcggtggcaatggccagcagcgt
gccggtgcgggcgcgggtcagggccagcgtcgtggcggtggcggtggcggtggcggcaat
ggtggcggccgtggccgcggccacggtggcaatggcggcggtcgcgccggctga
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