Stenotrophomonas maltophilia D457: SMD_1296
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Entry
SMD_1296 CDS
T02061
Symbol
deaD
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smz
Stenotrophomonas maltophilia D457
Pathway
smz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMD_1296 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smz03019
]
SMD_1296 (deaD)
03009 Ribosome biogenesis [BR:
smz03009
]
SMD_1296 (deaD)
Enzymes [BR:
smz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMD_1296 (deaD)
Messenger RNA biogenesis [BR:
smz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMD_1296 (deaD)
Ribosome biogenesis [BR:
smz03009
]
Prokaryotic type
rRNA helicases
SMD_1296 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
CCH11859
LinkDB
All DBs
Position
1442487..1444442
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AA seq
651 aa
AA seq
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MPSEFPMSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQ
TGTGKTAAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYG
GQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVE
AVLKKLPEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMH
KLDALTRILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAML
KEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATP
REKGMLRQIERATRQPIEEMQLPSVEAVNDTRINKFTSRISETLGAGGLDFYRQLLERFE
NEQNVPAIEIAAALAKLLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNER
GPRFERGSRRDDAEGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANE
AGLESRFIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRALAPGEDTNPAPR
PFKPRFDKRGPGGPGGPRRGGPGGQGGDRGGDRDSRPPRRDGFKPRGPRSF
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
gtgccttcggagttccccatgtcccaagattcccaagcgccgctgcagtttgcgcagctc
ggcctgtccgagcccgtgatgcaggccgtcaccgccatcggctacgaaaccccgtcgccg
atccaggccgccaccatcccggcgatgctggaaggccgcgacgtgctgggccaggcccag
accggtaccggcaagaccgctgcctttgcactgccggtactgtccaacatcgacctgcag
cagatcaagccccaggccctgatcctggcgccgacccgcgaactggccatccaggttgcc
gaggcgttccagtcctattcgtcgaagatccccggcttccgcgtgctgccggtgtacggc
ggccagccctacggccagcagctgtcggccctgcgccgcggcgtgcatatcgtggtcggt
acccccggccgcgtgatcgatcacctggaccgcagcaccctggacctgtccgagctgaag
acgctggtgctggacgaagccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaa
gcggtgctgaagaagctgccggagcagcgccaggtggccctgttctcggccaccatgccg
ccgcagatccgccgcatcgcgcagacctacctgcaggacccggtggaagtgaccatcgcg
gccaagaccactacttcggccaacatccgccagcgttactggtgggtgagcggcatgcac
aagctggacgcgctgacccgcatcctggaagtcgagccgttcgacgcgatgatcatcttc
gcgcggaccaaggccggcaccgaagaactggccagcaagctgcaggcgcgtggcctggcc
gctgccgccatcaacggtgacatgcagcaggcccagcgtgagcggaccatcgccatgctg
aaggaaggcaagctggacatcctggtcgccaccgacgtggccgcgcgcggcctggacgtg
gagcgcatcagccacgtgctgaactacgacatcccgtacgacaccgaaagctacgtgcac
cgcatcggccgtaccggtcgtgccggccgcagcggcgaggcgatcctgttcgccaccccg
cgcgagaagggcatgctgcgccagatcgagcgcgccacccgccagccgatcgaagagatg
cagctgccgagcgtggaagcggtcaacgacacccgcatcaacaagttcacctcgcgcatc
agcgaaaccctcggcgccggtggcctggacttctaccgccagctgctggagcgcttcgag
aacgagcagaacgtgccggccatcgagatcgctgccgcgctggccaagctgctgcagggc
gataccccgttcctgctgcagccgccggtgcgtgccccgcgcgaagagcgcgcaccgcgc
gagcgcttcgaccgtggtgaccgcccggaacgtggtgatcgcttcgaccgcaacgaacgg
ggtccgcgcttcgagcgtggctcgcgccgtgacgacgccgaaggtggttttgaacagcgt
ccgcgccgtgaggttccgccgcgtggtgcaccggagcagggcatggagacctaccgtatt
tcggtcggtcaccagcatggcgtgaagccggccaacatcgtcggcgccattgccaacgaa
gccggcctggaaagccgcttcatcggccgcatcgacatccacgacgacttctcgctgctg
gacctgccggcacagatgccgccggacgtgctgtcgcacctgcagaaggtctgggtgtcc
ggccagcagctgcagatgcgtgcgctggctccgggtgaagacaccaacccggccccgcgc
ccgttcaagccgcgcttcgacaagcgtggcccgggcggtccgggtggcccgcgtcgtggc
ggcccgggcggccagggtggcgaccgcggcggtgaccgcgacagtcgcccgccgcgtcgt
gacggcttcaagccgcgcggcccgcgcagcttctaa
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