Stenotrophomonas maltophilia D457: SMD_1323
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Entry
SMD_1323 CDS
T02061
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smz
Stenotrophomonas maltophilia D457
Pathway
smz03030
DNA replication
smz03430
Mismatch repair
smz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMD_1323 (dnaE)
03430 Mismatch repair
SMD_1323 (dnaE)
03440 Homologous recombination
SMD_1323 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smz03032
]
SMD_1323 (dnaE)
03400 DNA repair and recombination proteins [BR:
smz03400
]
SMD_1323 (dnaE)
Enzymes [BR:
smz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SMD_1323 (dnaE)
DNA replication proteins [BR:
smz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SMD_1323 (dnaE)
DNA repair and recombination proteins [BR:
smz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SMD_1323 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
CCH11886
LinkDB
All DBs
Position
complement(1478125..1481715)
Genome browser
AA seq
1196 aa
AA seq
DB search
MSNSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVLIAEEGQDPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAVHPDWLKAGNANLFALAGRQSLAGRLALDGKHELAEQQLADWQRVFGDGLHL
ELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPSDFSAHEARVCISTGRVLDDP
KRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFLPNYPVPDDET
LDTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVSKLIPNILGIH
LKDALGKGKEGPSSEMASAELIQRYETEDDVRDLIDLALQLEDLTRNAGKHAGGVVIGPE
PLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRH
ERAGIPPVDIAAIPLDDTPTYRDIFANGNTGAVFQFESSGMRRLLKDARPDRFEDLIALV
SLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGGYSL
GGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVDGPKADEIFDLMEKFAGYGFNKSHAA
AYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDEVRNLGLTVLPPKVNQSAFM
FEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGPFKDLLDFCTRVGSAKLNRRTLEAM
INCGALDELGRNRASLMLQLPEVIKATDQMARERASGQNSLFGGPDPSATTIQLDLPEAE
EWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGSVEKIWSANSGGGGGGEKRW
RPEVQTVLAGQVVGVRRKGESQIFIQLEDGRGRVECSAFSDAMAEFGHLMTKDRILVVKG
GLREDEFNGGFALRIRQCWDFDEVCANYATRLSLRLDLRQQRPVWERIDALLDRHRPGRT
PLRLDLLLKGPHGGVAGMLDVSGQSAVRIDSKLMEALRADPAVRTLKVRYSPPWAS
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcccgcttcgtacatctccacgtccacaccgagttctcgctggcggactcc
accatccgtgtgccggccaaaccggaccaggcggacccgaagaaggccaagcaggccaac
ctgctgtcgcgctcggtcgaactcggcctgcccgcgctggcggtgaccgacctcaacaac
ctgttcgccctggtcaagttctacaaggccgccgaaggcgtgggcatcaagccgatcgcc
ggtgccgacgtgctgatcgccgaggaaggccaggacccgtggcggatgaccctgctgtgc
cgcgaccgcgagggttacctgagcctgtcgcggctgctgacccgcgcctggatggaaggc
catcgccccgagggcggcgtggccgtgcacccggactggctgaaggccggcaacgccaac
ctgttcgcattggccgggcggcagagcctggccgggcgcctggcgctggacggcaagcat
gaactggccgagcagcagctggccgactggcagcgcgtgttcggcgatggcctgcacctg
gagctgacccgcaccggccgcgagggcgaggaaaccttcaaccagttcgcgctgatggcc
gccggccagcgtggcctgccggtggtggccagcaacgacgtgcgcttcctgtcgccgtcg
gacttcagcgcgcacgaagcgcgcgtgtgcatttccaccggccgcgtgctggacgacccc
aagcgcccgcgcgaatacagcgaccagcagtacctgaagtcggccgaggagatgtgcgcg
ctgttcgccgacatccccgatgcgatcgacaacacgctggcgctggccgagcgctgcaac
atcgagatgcggctgggcacctacttcctgcccaactacccggtgccggacgacgagacg
ctggacacctggatccagaagatgtcgcgcgatggcctggaagagcgcctggagaagaat
ccgctggcgccgggcaagacccgcgaagagtatttcgagcgcctggaattcgagctcaac
accatcatcaagatgggcttcccgggctacttcctgatcgtggccgacttcatccagtgg
ggcaagaaccagggtattccgatcggccccggccgtggttcgggtgccggttcgctggtg
gcgtgggcgctgaagatcaccgatctggacccgctgccgtacaacctgctgttcgagcgc
ttcctgaacccggaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtgatcgactacgtcgcccgcaagtacgggcgcgagcgcgtcagccagatc
atcacctacggcaccatggccgccaaggcggtggtgcgcgactccggccgcgtgctcggc
ttcccgtacggtctggtcgacggcgtctccaagctgatcccgaacatcctcggcatccac
ctgaaagatgcgctgggcaagggcaaggaaggcccgagctctgagatggcgtcggccgaa
ctgatccagcgctacgagaccgaggacgatgtccgcgacctgatcgacctggcgctgcag
ctggaagacctgacccgcaacgccggcaagcacgccggtggcgtggtgatcgggcccgag
ccgctgagcgagttctgcccgctgtacgccgaacacgacgagaacggcctcggcaagaac
ccggtcacccagttcgacaagaacgacgtggaagaagtgggcctggtgaagttcgacttc
ctgggcctgcgcacgctgaccatcatcgactgggcggtgaaggcgatcaacaagcgccat
gagcgcgccggcatcccgccggtggacatcgccgcgatcccgctggacgacacgcccacc
tacagggacatcttcgccaacggcaacaccggcgcggtgttccagttcgaatcctcgggc
atgcgccgcctgctgaaggacgcgcgccccgaccgtttcgaagacctgatcgcgctggtg
tcgctgtaccgccccggcccgatggacctgattccctccttcaacgcgcgcaagcacggc
caggaagagatcatctatcccgatccgcgcaccgaagccatcctgaaggacacctacggc
atcatggtgtaccaggagcaggtcatgcagatggcgcagatcgtcggcggctactcgctg
ggcggcgccgacctgctgcgccgcgcgatgggcaagaaggtaccggccgaaatggccaag
caccgcgagatcttccgcgaaggtgcagccaagggcggcgtcgatggccccaaggccgac
gaaatcttcgacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgct
gcctacgcgctggtcagttaccagaccgcctggctgaaacgccattacccggctgagttc
atggcggccacgctgtcgtccgatctggacaacaccgacaaagtggtcggcttcctcgac
gaggtgcgcaacctcggcctgaccgtgctgccgcccaaggtgaaccagtcggccttcatg
ttcgaagcggtgacgccggacaccatccagtacggcctcggggcgatcaagggcgtcggc
cagggtgcctgcgaggcggtggtcgaggagcggctgaagggcggcccgttcaaggacctg
ctcgacttctgcacgcgcgttggttcggccaagctcaacaggcgcacgctggaagcgatg
atcaactgtggtgcgttggacgagctcggccgcaaccgtgcctcgctgatgctgcagctg
ccggaggtgatcaaggctaccgaccagatggcccgcgagcgggcttcgggacagaactcg
ctgttcggtggcccggacccgagcgcgaccacgatccagctggacctgcccgaagccgag
gagtggccgctgctgcagcgcctgaacggcgagcgcgacacgctgggcttctatctcagt
ggccacccgttcgatccctggcgcgacgatgtgcgcgatctggtcggcaatgacctgggt
tcggtggagaagatctggagcgccaacagcggtggtggcggcggcggcgaaaagcgctgg
cgcccggaggtgcagacggtgctggccggccaggtggtcggcgtgcgccgcaagggcgag
agccagatcttcatccagcttgaggacggacgtggccgcgtcgagtgcagcgcgttctcc
gacgcgatggccgagttcggccacctgatgaccaaggaccgcatcctggtggtcaagggc
ggcctgcgcgaggacgagttcaatggcggcttcgcgctgcgcatccgccagtgctgggac
ttcgatgaggtctgcgccaactacgccacgcggctgtcgctgcgcctggacctgcgccag
cagcgcccggtctgggagcgcatcgatgcgctgctcgaccgccatcgcccgggacggacg
ccactgcgcctggacctgctgctgaaggggccgcacggcggcgtcgccggcatgctcgat
gtgtccgggcagagcgcggtacgcatcgattccaagctgatggaggcgctgcgcgccgac
ccggccgtgcgcacgctgaaggtgcgctacagcccgccatgggccagctga
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