Stenotrophomonas maltophilia D457: SMD_2193
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Entry
SMD_2193 CDS
T02061
Name
(GenBank) Excinuclease ABC subunit A paralog of unknown function
KO
K03701
excinuclease ABC subunit A
Organism
smz
Stenotrophomonas maltophilia D457
Pathway
smz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMD_2193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smz03400
]
SMD_2193
DNA repair and recombination proteins [BR:
smz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMD_2193
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SMD_2193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
nSTAND1
DnaJ_CXXCXGXG
AAA_29
AAA_21
AAA_16
RsgA_GTPase
DUF4350
Motif
Other DBs
NCBI-ProteinID:
CCH12734
LinkDB
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Position
complement(2447688..2450333)
Genome browser
AA seq
881 aa
AA seq
DB search
MSNTPFGESSCAAAASGCIEVRGAREHNLKNVDVSIPRNALVVFSGVSGSGKSSLAFGTV
FAEAQRRYFESVAPYARRLIDQAGVPDVDAIDGLPPAVALQQQRGASNARSSVGSVTTLS
SLVRMMYSRAGAYPAHQPMLYAEDFSPNTPQGACSTCHGLGHVYEVTEALMVPDPSLSIR
ERAIASWPPAWHGQNLRDILVTLGYDIDVPWKKLPKKDREWILFTEDTPTVPVYAGFTPA
ETRAALKRKLEPSYMGTYTGARRYVLHTFANTQSALMRKRVSRYMEGKLCPACKGKRLKP
EALSVTFAGVDIGEFMRLPLDQLAGLLEPIAQGDFSAHSHGARTGRSATPRDRAKRAASG
HATHEGAPDVRLTSALSEEKRLAAQRLAGGVMARVRQLRELGLGYLSLDRATPTLSAGEL
QRLRLATQLSSLLFGVLYVLDEPSAGLHPADSQALYDALDRLRDGGNSVFVVEHDLDLMR
RAQWLVDVGPQAGEHGGRVLYSGEPDGLRRIEDSRTARYLFDQVPAPASRQRSADRWLEL
KGIHRHNLQGVDAQLPLGVLTAVTGISGSGKSSLMAQALPELMLLHLGHEPVDDSADSTP
EDGPTVIEATRGQLAGAVDAIQRVVQVDQKPIGRTPRSNLATYTGLFDHVRKLFAATPDA
RRRRFDAGRFSFNVAKGRCETCEGEGFVSVELLFMPSVYAPCPACHGARYNEATLKVLWN
GRNIAEVLQMTVDQAQAFFAGEEAIARPLQLLQEIGLGYLRLGQPATELSGGEAQRIKLA
TELQRSQRGRTLYVLDEPTTGLHALDADRLLVQLQRLVDAGNTVVMIEHDMRSVAQADWV
IDVGPGAGGAGGTIVAKGTPRQVARAKGSRTAPFLARELAL
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaccccctttggcgagtcgtcatgcgcagccgcggccagcggctgcatcgag
gtccgcggcgcacgcgagcacaacctgaagaacgtcgacgtctccattccacgcaatgcg
ctggtggtgttctccggggtatcgggttcgggcaaatcctcgctggcgttcggcacggtc
ttcgccgaggcccagcggcgctacttcgaatccgtcgcaccgtatgcgcgccgcctgatc
gaccaagcgggcgtgcccgacgtggatgccatcgacggcctgccgccggcggtggccctg
cagcagcagcgcggtgccagcaacgcacgttcatcggtgggcagcgtgaccacgctgtcc
agcctggtacgcatgatgtattcgcgtgcaggcgcgtacccggcccaccagcccatgctg
tacgccgaggacttctcgcccaatacgccgcagggggcctgcagcacctgccatgggttg
ggccacgtctacgaagtgaccgaagcgctgatggtgccggacccgtcgctgagcatccgc
gagcgcgccatcgcctcctggccgccggcctggcatggccagaacctgcgcgacatcctg
gtcacgctgggctacgacatcgacgtgccgtggaagaagctgccgaagaaggaccgggag
tggatcctgttcaccgaggacacgccgaccgtgcccgtctatgccggcttcacgcctgcc
gagacgcgtgccgcactcaagcgcaagctggagcccagttacatgggcacctacaccggc
gcccgccgctacgtgctgcacaccttcgccaacacccagagcgcgctgatgcgcaagcgt
gtctcgcgctacatggaaggcaagctgtgccccgcctgcaagggcaagcgactgaagccc
gaagcgctttcggtcaccttcgccggcgtggacatcggcgagttcatgcggctgccgctg
gatcaactggccgggctgctcgagcccatcgcgcagggcgacttcagtgcacacagccac
ggcgcacgcaccggcaggagtgcgacgccccgcgatcgcgccaagcgggcagcctctggc
cacgcgacccacgaaggcgcgcccgatgtgcggctgacctcggccctgtcggaggagaaa
cgcctggccgcgcagcgactggcgggtggggtcatggcgcgggtacggcagctgcgcgag
ctgggcctggggtatctctcgctggatcgcgccacgcccacgctgtcggccggcgaactg
cagcgcctgcggctggccacacagctcagctcgttgctgtttggtgtgctgtacgtgctc
gatgagccctcggccggcctgcatccggccgacagccaggcgctgtacgacgcgctggac
cggctgcgcgatggcggcaactcggtgttcgtcgttgaacacgatctggacctgatgcga
cgtgcacagtggctggtggacgtgggaccgcaagcgggcgagcacggcgggcgcgttctc
tacagtggcgagcccgacggcctgcgccgcatcgaggactcgcgcaccgcgcggtacctg
ttcgaccaggtgcctgcgcctgccagccggcaacgcagcgccgaccgctggctggagctg
aagggcatccaccgccacaacctgcagggcgtggacgcgcagctgccgctgggagtgctg
accgcagtgaccggcatttccggatcgggcaagtccagcctgatggcgcaggcactgccc
gagctgatgctgctgcacctagggcacgagcccgtagacgacagcgccgacagcacgccc
gaggacgggccaaccgtgatcgaagcgacgcggggccagcttgccggagccgtggacgcc
atccagcgcgtggtgcaggtggaccagaaaccgatcggccgcacgccacgctccaacctg
gccacctataccggcctgttcgatcacgtgcgcaagctgttcgccgcgacccccgacgcg
cgacgccgccgctttgacgccggccgcttttcgttcaacgtggccaagggccggtgcgag
acctgcgaaggcgagggtttcgtcagcgtggaactgctgttcatgcccagtgtctatgcg
ccatgccccgcctgccatggcgcccgctacaacgaggccacgctgaaggtgttgtggaac
ggccgcaacattgccgaagtcctgcagatgacggtcgaccaggcacaggcattcttcgcc
ggtgaggaagccatcgcgcggccgctgcagctgctgcaggagatcggcctgggctatctc
aggctcggtcagccggccacggagctttcagggggcgaggcgcagcgcatcaagctggcg
accgagctgcagcgcagccaacgcggccgcacgctctatgtactggacgaacccaccacc
ggcctgcatgcgttggacgcagacaggctgctggtgcagttgcagcggctggtggacgcg
ggaaacaccgtggtgatgatcgagcacgacatgcgttctgtcgcacaggccgactgggtg
attgacgtcggcccgggcgcaggcggcgcaggtggaaccatcgtggcgaagggtacgcca
cgccaggtggcccgcgccaagggcagcaggacggcgccgttccttgccagggaactggcg
ctgtag
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