Stenotrophomonas maltophilia D457: SMD_2739
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Entry
SMD_2739 CDS
T02061
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
smz
Stenotrophomonas maltophilia D457
Pathway
smz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SMD_2739 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smz03400
]
SMD_2739 (sbcB)
Enzymes [BR:
smz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SMD_2739 (sbcB)
DNA repair and recombination proteins [BR:
smz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SMD_2739 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SMD_2739 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SMD_2739 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
BON_like
Motif
Other DBs
NCBI-ProteinID:
CCH13269
LinkDB
All DBs
Position
3047102..3048541
Genome browser
AA seq
479 aa
AA seq
DB search
MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV
TGITPQQALAEGISEAEAFDRINEQLSRPGTCVLGYNTLRFDDEFVRYGLFRNFHDPYER
EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD
VRATIGMARLFKQSQPRLWEYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPV
LPLAVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYLRASELPEGVARVPLKEVHLNK
VPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRVATVADVDA
SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPAERQ
RWQDYRRQRLLGDGGLGELNLPQYRQQLDALAAEAPDDARRQALLQSLRDWGQHLQETL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagcttcctgttctacgacctggaaaccttcggccaggacccgcggcgcacg
cgcatctcgcagtacgccgcgatccgtaccgatgccgacctcaacgagatcgatacgccg
gtcagcttcttcgtgcgcccggccgatgacctgctgccctcaccgatggccaccctggtt
accggcatcaccccgcagcaggccttggccgagggcatcagcgaggccgaggccttcgac
cgcatcaacgaacagctgtcgcgccccggcacctgcgtgctgggctacaacacgctgcgc
ttcgacgatgaattcgtccgctacgggctgttccgcaatttccacgacccgtacgagcgc
gagtggcgcaacggcaattcgcgctgggacctgctggacatgctgcgcctgatgcgcgcg
atgcgcccggacggcatccagtggccgctgcgcgaggacggcgccacctcgttcaagctc
gagcacctggccgaggccaacaacgtgcgcgagggcgatgcgcacgaagcgctgtccgac
gtacgtgccaccatcggcatggcacgcctgttcaagcagtcgcagccgcgcctgtgggag
tacgcgctgaagctgcgtgacaagcgcttcgtcggcggcctgctggacgtggccgcgatg
aagccggtactgcacatttccatgcgctacccggccagtcgcctgtgcgcggcgccagta
ctgccgctggcagtgcaccccaccatcaacaaccgggtgatcgtgttcgaccttgaaggc
gagatcgacgacctgctggaactgccggccgaggtgatcgcacagcgcctttacctgcgc
gccagcgagctgcccgaaggcgtggcgcgggtgccgctgaaggaagtgcatctgaacaag
gtgccagcgctgatcgcctggaaccacctgcgcgccgatgaccacgcgcgcctcggcctg
gacgtggccgcgatcgaggccaaggtggaacggctgcgcgcgttcgccccgcagctggcc
gagaaggcgcgccaggtctacaaccagccccgcgtcgccaccgtggccgacgtcgatgcc
tcgctgtacgacggtttcctcggcaacggcgacaaaccgctgcttgcgctggcacgcacc
accgcgcccgagcagctggccgcgctggaaggccgtttccgcgatccgcgcctgccggag
ctgctgttccgctaccgcgcgcgcaaccaccccgacagcctcgcgccggcggaacgccag
cgctggcaggattaccgccgccagcgcctgctcggcgacggcgggctgggcgaactcaac
ctgccccagtaccggcagcagctcgatgcactggccgccgaagcgcccgacgatgcgcgg
cgccaggccctgctgcaatcgctgcgcgactggggccagcacctgcaggagacactgtga
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integrated database retrieval system
