Stenotrophomonas maltophilia D457: SMD_2958
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Entry
SMD_2958 CDS
T02061
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smz
Stenotrophomonas maltophilia D457
Pathway
smz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMD_2958 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smz03019
]
SMD_2958 (pnp)
03016 Transfer RNA biogenesis [BR:
smz03016
]
SMD_2958 (pnp)
Enzymes [BR:
smz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SMD_2958 (pnp)
Messenger RNA biogenesis [BR:
smz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SMD_2958 (pnp)
Transfer RNA biogenesis [BR:
smz03016
]
Prokaryotic type
tRNA degradation factors
SMD_2958 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_KhpA-B
DUF7680
KH_PNO1_2nd
S1_2
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
CCH13482
LinkDB
All DBs
Position
complement(3273504..3275612)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLN
PDVDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAG
TSNAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNEA
LISALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVFEALAGRVAAEGWNPAELSKEFGE
LEYRTMRDSVLDTKVRIDGRALDTVRPITVKTGVLPRTHGSSLFTRGETQAIVTITLGTA
RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE
SFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS
DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMEQALQQAKAGRLHILGEMAH
GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV
EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGDAVSAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacgcttgagaccggc
gaagtcgcccgtcaggccagcggcgccgtcatcgtcaagatggacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaaggccaggacttcttcccgctgaccgtc
gattatcaggaaaagttctacgccggcggccgtatcccgggtggtttcttcaagcgcgaa
ggccgtgcgaccgagaaggaaaccctgatctcgcgtctgatcgaccgtccgatccgcccg
ctgttcccggaagactacaagaacgaagtgcagatcatcgccacggtgatgtcgctgaac
ccggacgtggacggtgacatcccggccctgatcggtgcttcggctgccctggccctggct
ggcaccccgttcatgggtccgatcggagcggccaaggtcggttacaagaacggcgagtac
atcctgaacccgaccgtcagcgaactggctgactcgcagctggagctggtcgtcgccggt
acctccaacgccgtgctgatggttgaatccgaagccgcgctgctgtccgaagaagtgatg
ctgggcgccgtgaccttcggtcaccgcgaaatgcagaaggtcatcaacgcgatcaacgag
ctgaccgtcgaagccggcaccaagccgtcgacctgggaagccccggccaagaacgaagcg
ctgatctccgccctgaaggaagccatcggcccgcgcctgggcgaagccttccaggtgcgt
gacaagctgcagcgccgcgacgccatctcggcgatcaagaaggacgtgttcgaagccctg
gctggtcgcgtggccgctgaaggctggaacccggccgagctgtcgaaggaattcggcgag
ctggaataccgcaccatgcgtgactcggtgctggacaccaaggtccgtatcgacggccgt
gcgctggacaccgtccgcccgatcaccgtgaagaccggcgtgctgccgcgtacccacggt
tcctcgctgttcacccgtggcgaaacccaggccatcgtgaccatcaccctgggcaccgcc
cgtgacggccaggtcattgacgccgttgccggtgagtacaaggaaaacttcctgttccac
tacaacttccctccgttctcggtgggtgagtgcggccgcatgatgggcccgaagcgccgc
gaaatcggccacggtcgcctggccaagcgcggcgtgctggctgtcatgccgtcgctggaa
tccttcccgtacaccatccgcgtcgtctcggaaatcaccgagtcgaacggttcctcgtcg
atggcatcggtctgcggctcgtcgctggccctgatggacgccggcgtgccggtgaaggcg
ccggtggccggtatcgccatgggcctggtcaaggaaggcgagcgcttcgtcgtcctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtaccgct
gagggcatttccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
gagcaggctctgcagcaggccaaggctggtcgtctgcacatcctgggcgaaatggcccac
ggcctgaccgctccgcgtgaagagctgtcggactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggccatc
accaaggaaaccggcacccagatcgacatccaggatgacggcaccatcgtcatcgcttcg
gtcaatgccatcgctgcccaggccgccaaggcccgcatcgagcagatcacctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
acgatcctgccgggcaaggacggtctggtccacgtgtcgcagatctccagcgatcgcgtc
gagaaggtcggcgacgtgctgaaggaaggcgatgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgtatccgcctgtcgatgaaggccgtggaagaaggcgacgccgtcagc
gccgaataa
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