Stenotrophomonas maltophilia D457: SMD_4070
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Entry
SMD_4070 CDS
T02061
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
smz
Stenotrophomonas maltophilia D457
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smz03019
]
SMD_4070 (hrpB)
Enzymes [BR:
smz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SMD_4070 (hrpB)
Messenger RNA biogenesis [BR:
smz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SMD_4070 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
HA2_C
Motif
Other DBs
NCBI-ProteinID:
CCH14576
LinkDB
All DBs
Position
4570000..4572504
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AA seq
834 aa
AA seq
DB search
MNAPLFPISPLLPQIQQQLAVQPRLVLEAPPGAGKTTQVPLALLDAPWLQGRKIILLEPR
RVAARSAALFMARQLGEEVGGTVGYRIRFENKVSARTRIEVVTEGILTRMLQDDPMLETV
GAILFDEFHERHLSGDLGLALALDVQAQLRDDLRLVVMSATLDGERLARFLDAPRLSSEG
RSYPVAISHFPARRDEALELQVRRAVQQALAEHPGDLLVFLPGQREIARVQAGLQESLDG
NVEVLALHGELPVEQQARVLQAASDGRRRVVLATNVAESSVTLPGVRVVIDSGQAREPRY
DPNSGFTRLDVVAIAQASADQRAGRAGRVAEGVAWRLWPQSQRLEPQRRAEIDQVELAGL
ALELAAWGSSDLRFLDPPPAGPMGAARELLQRLGALSDSGAITALGRRVLALGTHPRMAA
MLLAAPDARAQALAADLAALLEARDPLRQGGDALAARWRALAAFRTGRAPGDANRSGLAA
IDAAAKQWRRRLRCEAAPPASIEAHELGDLLAHAFPDRIGFQHPGDPLRYLLANGRSARL
HELSDLRGEPWLVASELRFEARDALLLRAAPVDEGHLRKAWPERFVTEDVVRWDSERRAL
VALRETRFDRIVLDSRSAGRVDPQHAAQALTDAVAELGLQALPWTEGLRQWQARVESLRR
WMPELGLPDCSDDALLATRAQWLQPAFAGRTRLDALDESSFGEALKSPLEWSQRQLVERH
APTRITVPSGLERPITYALDSESGDPLPPVLAVKLQELFGLADTPRIADGRVPLTLHLLS
PGGRPLQVTQDLRNFWESTYAEVKKEMKGRYPRHPWPDDPWTATATHRAKPRGT
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccccgctcttcccgatttccccgctgctgccgcagatccagcagcagctggcc
gtgcaaccacggctggtgctggaggccccgcccggtgccggcaagaccacccaggtgccg
ctggcgctgctcgacgcgccgtggctgcagggccgcaagatcatcctgctggaaccacgt
cgggtcgccgcgcgcagcgcggcgctgttcatggcacggcagctgggtgaggaggtcggc
ggcacggtcggctaccgcatccgcttcgagaacaaggtatccgcgcgcacccgcatcgag
gtggtcaccgagggcatcctgacccggatgctgcaggacgacccgatgctggaaaccgtc
ggcgcgatcctgttcgatgaattccacgagcgccatctcagtggggatctgggcctggcg
ctggcgctggacgtgcaggcgcagctgcgcgacgacctgcgcctggtggtgatgtcggcc
acgctggacggcgagcggctggcacgcttcctcgatgcgccgcggctgagcagcgagggc
cgcagttatccggtggcgatcagccacttcccggcgcgccgcgatgaagccctggaactg
caggtgcgccgcgcggtgcagcaggcactggccgagcaccccggtgacctgctggtgttc
ctgcccggccagcgcgagatcgcgcgcgtccaggccggcctgcaggagtcactcgatggc
aacgtcgaggtgctggcgctgcatggcgagctgccggtcgaacaacaggcgcgcgtgttg
caggccgccagcgatggccgccgtcgcgtggtgctggcgaccaacgtggccgagtcgtcg
gtgaccctgcccggcgtgcgcgtggtgatcgacagcggccaggcgcgcgagccgcgctac
gaccccaacagcggcttcacccggctggacgtggtggccatcgcgcaggcgtcggccgac
cagcgcgcgggccgtgccggtcgcgtggccgagggcgtggcctggcggctgtggccgcag
tcgcagcggctggagccgcagcgccgcgcggagatcgaccaggtggaactggccggactg
gcgctggaactggccgcgtggggcagcagcgacctgcgcttcctcgacccgccaccggcc
ggcccgatgggtgcggcgcgcgaactgctgcaacgcctgggtgcactgtcggactcgggc
gcgatcaccgcactcgggcgccgtgtactggcgctgggtacgcacccgcggatggcggcg
atgctgctggcagcgcccgatgcccgcgcgcaggcgctggccgccgatctggccgccctg
ctggaagcgcgcgacccgctgcgccagggcggtgacgcgctggcggcccgctggcgcgca
ctggccgcgttccgcactggccgcgcgccgggcgatgccaaccgcagcgggctggccgcc
attgatgccgccgccaagcagtggcgtcgccgcctgcgctgcgaggctgcgccgccggcc
agcatcgaggcgcacgaactgggcgatctgcttgcacacgcctttcccgaccggatcggt
ttccagcatcccggcgatccgctgcgctacctgctggccaatggccgcagcgcgcgcctg
cacgaactgagtgacctgcgcggtgagccgtggctggtggccagcgaactgcgcttcgag
gcgcgcgatgcgctgctgctgcgtgccgcaccggtggatgaaggccacctgcgcaaggca
tggccggagcgcttcgtcaccgaagacgtggtgcgctgggacagcgagcgacgcgccctg
gtggcgctgcgcgagacccgtttcgaccggatcgtgctggacagccgctcggccggccgg
gtcgatccgcagcacgccgcgcaggcgctgaccgatgcggtggccgagctcggcctgcag
gcgctgccgtggaccgagggcctgcgccagtggcaggcacgggtggaatcgctgcggcgc
tggatgcccgagctcggcctgcccgactgcagcgacgatgccctgctggccacgcgcgca
caatggctgcagcccgcgttcgccggcaggacgcgactggatgcgctggatgaatccagc
ttcggcgaggcgctgaaatcgccactggagtggtcacaacggcagttggtcgagcgtcat
gcgccgacccgcatcaccgtgccgtccggactggagcggccgatcacctatgcgctggac
agcgagagcggcgatccgctgccgccggtgctggcggtgaagctgcaggaactgttcggc
ctggccgacacgccgcgcatcgccgatggccgcgtgccgctgaccctgcacctgctctcc
cccggcggccgcccgctgcaggtcacccaggatctgcgcaacttctgggaaagcacctac
gccgaagtgaaaaaggagatgaagggccgttacccgcgccacccatggccggatgatccg
tggacggcgacggccacgcaccgggccaagccgcgcggaacctga
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