Stenotrophomonas maltophilia D457: SMD_4076
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Entry
SMD_4076 CDS
T02061
Symbol
rtcB
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smz
Stenotrophomonas maltophilia D457
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smz03016
]
SMD_4076 (rtcB)
Enzymes [BR:
smz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SMD_4076 (rtcB)
Transfer RNA biogenesis [BR:
smz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SMD_4076 (rtcB)
Prokaryotic type
tRNA splicing ligases
SMD_4076 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
CCH14582
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All DBs
Position
4578051..4579271
Genome browser
AA seq
406 aa
AA seq
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MDTQHNYQWLHAEGTTPIKGWVNGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDDLRQLRNSIERSIPVGNGRGG
EHHRMPDSIHTRLVQSGLAAGLEKIKDRHRRIRTDKLDRQLGTLGGGNHFIELCLDETDT
VWVMLHSGSRGTGNLIGTYFIEKAREELARRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARQNREAMMSRVLAEMRHRLPKFQLAAMAVNCHHNYVQKETHHGQELLVTRKGAV
SAREGELGIIPGSMGTRSYIVRGKGNADSFHSCSHGAGRVMSRGTARQQITLAQHREATA
HVECRKDSGVLDESPAAYKSIDDVMAAQLDLVEVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggacactcaacacaactatcaatggctgcacgccgagggcaccacgccgatcaagggc
tgggtcaacggtgtgccgctggaagcgcaggcgcatgagcagctgcgcaacatcgccgcg
atcccgttcgtcgggccgtgggtggccgtgatgccggacgtgcacctgggcaagggcgcg
accgtcggctcggtgatcccgacccgcggtgcgatcatcccggccgcggtcggcgtcgac
atcggctgcggcatggcggcggtacgcaccacgctgcgcgccaacgacctgcccgacgac
ctgcggcagctgcgcaacagcatcgagcgcagcattccggtcggcaacgggcgcggcggc
gagcatcaccgcatgcccgacagcatccacacccggctggtgcagtccgggctggccgcc
ggcctggagaagatcaaggacaggcaccgcagaatccgcaccgacaagctcgaccgccag
ctgggtacgctgggtggcggcaaccacttcatcgaactgtgcctggacgagacggacacg
gtgtgggtgatgctgcacagcggatcgcgcggcaccggcaacctgatcggcacctacttc
atcgagaaggcgcgcgaggaactggcccggcgcgtgctcggcttccacctgccggacaag
gacctggcgttcttcatggaaggcgagccgctgttcgatgactacgtcgaagccgtgtcg
tgggcgcaggactacgcccggcagaaccgcgaggcgatgatgtcgcgcgtgctggccgag
atgcgccaccgcttgccgaagttccagctggcagcgatggcggtgaactgccaccacaac
tacgtgcagaaggagacgcaccacggccaggaactgctggtgacccggaagggggcggtg
agtgcgcgcgaaggcgagctgggcatcattcccggcagcatgggcacgcgcagctacatc
gtgcgcggcaagggcaacgccgacagcttccacagctgcagccacggtgccggccgggtg
atgagccgtggcacggcgcgccagcagatcacgctggcccagcaccgcgaggccaccgcg
cacgtggaatgccgcaaggacagcggcgtgctggacgagtcaccggccgcgtacaagtcg
atcgacgatgtgatggccgcacagctggacttggtcgaggtggtgcacaccctgcgccag
gtgctgtgcgtgaaggggtaa
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